{
    "type": "genome",
    "identifier": "GCF_000175615.1",
    "organism": "Rothia mucilaginosa ATCC 25296",
    "title": "Rothia mucilaginosa ATCC 25296",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000175615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00001919",
        "wgs_master": "ACVO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "553201",
        "species_taxid": "43675",
        "organism_name": "Rothia mucilaginosa ATCC 25296",
        "infraspecific_name": "strain=ATCC 25296",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/08/05",
        "asm_name": "ASM17561v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000175615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/175/615/GCF_000175615.1_ASM17561v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2255158",
        "genome_size_ungapped": "2255158",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000175615.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "1782",
        "protein_coding_gene_count": "1720",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-08-05",
    "dateModified": "2009-08-05",
    "datePublished": "2009-08-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rothia mucilaginosa ATCC 25296"
        ],
        "sample_taxid": [
            "553201"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.638 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2255158",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "575395",
        "N50 (bp)": "172461",
        "Gap Ratio (%)": "0.000177",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "1775",
        "Average Protein Length": "351.2",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
                "taxid": 43675,
                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 736,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia aeria",
                "strain": "strain=FDAARGOS_1137",
                "accession": "GCA_016726365.1",
                "taxid": 172042,
                "species_taxid": 172042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1916,
                "matched_fragments": 252,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9617,
                "matched_fragments": 211,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9293,
                "matched_fragments": 214,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aerolata",
                "strain": "strain=CCM 8669",
                "accession": "GCA_014635585.1",
                "taxid": 1812262,
                "species_taxid": 1812262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3532,
                "matched_fragments": 185,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia terrae",
                "strain": "strain=LMG 23708",
                "accession": "GCA_012396615.1",
                "taxid": 396015,
                "species_taxid": 396015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2167,
                "matched_fragments": 138,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria palustris",
                "strain": "strain=TAGA27",
                "accession": "GCA_016907795.1",
                "taxid": 71999,
                "species_taxid": 71999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.325,
                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sunyaminii",
                "strain": "strain=zg-ZUI122",
                "accession": "GCA_018866305.1",
                "taxid": 2816859,
                "species_taxid": 2816859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3168,
                "matched_fragments": 79,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sunyaminii",
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                "accession": "GCA_017353495.1",
                "taxid": 2816859,
                "species_taxid": 2816859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2443,
                "matched_fragments": 82,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria dechangensis",
                "strain": "strain=CGMCC 1.12187",
                "accession": "GCA_014636775.1",
                "taxid": 1176249,
                "species_taxid": 1176249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2313,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter pullicola",
                "strain": "strain=Sa2BUA2",
                "accession": "GCA_014836875.1",
                "taxid": 2762224,
                "species_taxid": 2762224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0061,
                "matched_fragments": 83,
                "total_fragments": 737,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria soli",
                "strain": "strain=M5W7-7",
                "accession": "GCA_003797835.1",
                "taxid": 2485125,
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                "relation_to_type": "type",
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                "ani": 76.9022,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
                "strain": "strain=NBRC 103060",
                "accession": "GCA_001552115.1",
                "taxid": 257984,
                "species_taxid": 257984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8887,
                "matched_fragments": 68,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neomicrococcus aestuarii",
                "strain": "strain=DSM 105783",
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                "taxid": 556325,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_021922985.1",
                "taxid": 31965,
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                "ani": 76.1419,
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        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_000175615.1",
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                "matched_fragments": 736,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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            {
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                "mean_intra_species_ani": "97.28",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "ATCC",
        "25296"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}