{ "type": "genome", "identifier": "GCF_000176035.2", "organism": "Mesorhizobium opportunistum WSM2075", "title": "Mesorhizobium opportunistum WSM2075", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000176035.2", "bioproject": "PRJNA224116", "biosample": "SAMN02232036", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "536019", "species_taxid": "593909", "organism_name": "Mesorhizobium opportunistum WSM2075", "infraspecific_name": "strain=WSM2075", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/06/14", "asm_name": "ASM17603v2", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000176035.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/176/035/GCF_000176035.2_ASM17603v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6884444", "genome_size_ungapped": "6884444", "gc_percent": "63.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000176035.2-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "6699", "protein_coding_gene_count": "6520", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-06-14", "dateModified": "2011-06-14", "datePublished": "2011-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium opportunistum WSM2075" ], "sample_taxid": [ "536019" ], "sample_host_organism": [ "Biserrula pelecinus L" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "1.903 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6884444", "Number of Sequences": "1", "Longest Sequences (bp)": "6884444", "N50 (bp)": "6884444", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "6679", "Average Protein Length": "298.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, 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alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 79.1846, "matched_fragments": 659, "total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 79.1202, "matched_fragments": 711, "total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 79.0367, "matched_fragments": 636, "total_fragments": 2294, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 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