<?xml version="1.0" ?>
<BioSampleSet><BioSample submission_date="2009-06-04T14:52:04.473" last_update="2019-06-20T16:11:31.267" publication_date="2009-06-04T00:00:00.000" access="public" id="2506" accession="SAMN00002506">   <Ids>     <Id db="BioSample" is_primary="1">SAMN00002506</Id>     <Id db="JCVI" db_label="Sample name">HMP089-454 Sample</Id>     <Id db="SRA">SRS003142</Id>   </Ids>   <Description>     <Title>MIGS Cultured Bacterial/Archaeal sample from Pyramidobacter piscolens W5455</Title>     <Organism taxonomy_id="352165" taxonomy_name="Pyramidobacter piscolens W5455"/>     <Comment>       <Paragraph>Pyramidobacter piscolens is a member of the poorly characterized phylum Synergistes. It is a gram-negative, obligate anaerobe bacillus that has recently been reported in endodontic infections, and therefore may be part of the etiology of periradicular diseases. It is found in the human oral and vaginal cavities. This strain was isolated from the human oral cavity. </Paragraph>       <Paragraph>Keywords: GSC:MIxS;MIGS:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name abbreviation="JCVI">J. Craig Venter Institute</Name>   </Owner>   <Models>     <Model>MIGS.ba</Model>   </Models>   <Package display_name="MIGS: cultured bacteria/archaea; version 6.0">MIGS.ba.6.0</Package>   <Attributes>     <Attribute attribute_name="finishing strategy (depth of coverage)">Level 2: High-Quality Draft110x;140</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not determined</Attribute>     <Attribute attribute_name="estimated_size" harmonized_name="estimated_size" display_name="estimated size">2562000</Attribute>     <Attribute attribute_name="isol_growth_condt" harmonized_name="isol_growth_condt" display_name="isolation and growth condition">not determined</Attribute>     <Attribute attribute_name="specific host" harmonized_name="host" display_name="host">Homo sapiens</Attribute>     <Attribute attribute_name="project_type">Reference Genome</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">not determined</Attribute>     <Attribute attribute_name="biome" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">terrestrial biome [ENVO:00000446]</Attribute>     <Attribute attribute_name="misc_param: HMP body site">not determined</Attribute>     <Attribute attribute_name="nucleic acid extraction">not determined</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">missing</Attribute>     <Attribute attribute_name="feature" harmonized_name="env_local_scale" display_name="local-scale environmental context">human-associated habitat [ENVO:00009003]</Attribute>     <Attribute attribute_name="host taxid" harmonized_name="host_taxid" display_name="host taxonomy ID">9606</Attribute>     <Attribute attribute_name="project_name" harmonized_name="project_name" display_name="project name">Pyramidobacter piscolens W5455</Attribute>     <Attribute attribute_name="assembly">not determined</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not determined</Attribute>     <Attribute attribute_name="source_mat_id" harmonized_name="source_material_id" display_name="source material identifiers">DSM 21147, CCUG 55836</Attribute>     <Attribute attribute_name="material" harmonized_name="env_medium" display_name="environmental medium">biological product [ENVO:02000043]</Attribute>     <Attribute attribute_name="ref_biomaterial" harmonized_name="ref_biomaterial" display_name="reference for biomaterial">not determined</Attribute>     <Attribute attribute_name="misc_param: HMP supersite">oral</Attribute>     <Attribute attribute_name="num_replicons" harmonized_name="num_replicons" display_name="number of replicons">not determined</Attribute>     <Attribute attribute_name="sequencing method">454</Attribute>     <Attribute attribute_name="sop">http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf</Attribute>     <Attribute attribute_name="strain" harmonized_name="strain" display_name="strain">W5455</Attribute>     <Attribute attribute_name="environmental package" harmonized_name="env_package" display_name="environmental package">missing</Attribute>     <Attribute attribute_name="isolation-source" harmonized_name="isolation_source" display_name="isolation source">missing</Attribute>     <Attribute attribute_name="type-material">type strain of Pyramidobacter piscolens</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject">34581</Link>   </Links>   <Status status="live" when="2013-08-28T13:58:16"/> </BioSample> </BioSampleSet>
