{
    "type": "genome",
    "identifier": "GCF_000177335.1",
    "organism": "Pyramidobacter piscolens W5455",
    "title": "Pyramidobacter piscolens W5455",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000177335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00002506",
        "wgs_master": "ADFP00000000.1",
        "refseq_category": "na",
        "taxid": "352165",
        "species_taxid": "638849",
        "organism_name": "Pyramidobacter piscolens W5455",
        "infraspecific_name": "strain=W5455",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/12/30",
        "asm_name": "ASM17733v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000177335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/177/335/GCF_000177335.1_ASM17733v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2562014",
        "genome_size_ungapped": "2562014",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "140",
        "contig_count": "140",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-15",
        "total_gene_count": "2478",
        "protein_coding_gene_count": "2375",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-12-30",
    "dateModified": "2009-12-30",
    "datePublished": "2009-12-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pyramidobacter piscolens W5455"
        ],
        "sample_taxid": [
            "352165"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.721 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2562014",
        "Number of Sequences": "140",
        "Longest Sequences (bp)": "125203",
        "N50 (bp)": "37387",
        "Gap Ratio (%)": "0.000039",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "2310",
        "Average Protein Length": "309.8",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pyramidobacter piscolens",
                "strain": "strain=W5455",
                "accession": "GCA_000177335.1",
                "taxid": 638849,
                "species_taxid": 638849,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 790,
                "total_fragments": 793,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pyramidobacter porci",
                "strain": "strain=SM-530-WT-4B",
                "accession": "GCA_009695745.1",
                "taxid": 2605789,
                "species_taxid": 2605789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2806,
                "matched_fragments": 662,
                "total_fragments": 793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jonquetella anthropi",
                "strain": "strain=DSM 22815",
                "accession": "GCA_000237805.1",
                "taxid": 428712,
                "species_taxid": 428712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7332,
                "matched_fragments": 63,
                "total_fragments": 793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromyxobacter dehalogenans",
                "strain": "strain=2CP-1",
                "accession": "GCA_000022145.1",
                "taxid": 161493,
                "species_taxid": 161493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8675,
                "matched_fragments": 64,
                "total_fragments": 793,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000177335.1",
                "gtdb_species": "s__Pyramidobacter piscolens",
                "ani": 100.0,
                "matched_fragments": 790,
                "total_fragments": 793,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002007215.1",
                "gtdb_species": "s__Pyramidobacter sp002007215",
                "ani": 93.22,
                "matched_fragments": 653,
                "total_fragments": 793,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009695745.1",
                "gtdb_species": "s__Pyramidobacter porci",
                "ani": 92.3074,
                "matched_fragments": 661,
                "total_fragments": 793,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016286835.1",
                "gtdb_species": "s__Pyramidobacter sp016286835",
                "ani": 79.829,
                "matched_fragments": 234,
                "total_fragments": 793,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "97.39",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017940445.1",
                "gtdb_species": "s__Pyramidobacter sp017940445",
                "ani": 79.5176,
                "matched_fragments": 203,
                "total_fragments": 793,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Dethiosulfovibrionaceae;g__Pyramidobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.84",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.63",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.14,
        "cell_length": 0.06,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 30.0,
        "optimum_ph": null,
        "genome_size": 2562014.0,
        "gc_content": 59.841,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pyramidobacter",
        "piscolens",
        "W5455"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}