{ "type": "genome", "identifier": "GCF_000178455.1", "organism": "Brevibacterium mcbrellneri ATCC 49030", "title": "Brevibacterium mcbrellneri ATCC 49030", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000178455.1", "bioproject": "PRJNA224116", "biosample": "SAMN00139181", "wgs_master": "ADNU00000000.1", "refseq_category": "reference genome", "taxid": "585530", "species_taxid": "53363", "organism_name": "Brevibacterium mcbrellneri ATCC 49030", "infraspecific_name": "strain=ATCC 49030", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/04/20", "asm_name": "ASM17845v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000178455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/178/455/GCF_000178455.1_ASM17845v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2561804", "genome_size_ungapped": "2561804", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000178455.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "2417", "protein_coding_gene_count": "2311", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-04-20", "dateModified": "2010-04-20", "datePublished": "2010-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium mcbrellneri ATCC 49030" ], "sample_taxid": [ "585530" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.732 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2561804", "Number of Sequences": "96", "Longest Sequences (bp)": "139412", "N50 (bp)": "85492", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.0", "Number of CDSs": "2313", "Average Protein Length": "328.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "4", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium mcbrellneri", "strain": "strain=ATCC 49030", "accession": "GCA_000178455.1", "taxid": 53363, 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"status": "below_threshold" }, { "organism_name": "Brevibacterium yomogidense", "strain": "strain=DSM 24850", "accession": "GCA_016107685.1", "taxid": 946573, "species_taxid": 946573, "relation_to_type": "type", "validated": true, "ani": 76.6232, "matched_fragments": 68, "total_fragments": 808, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000178455.1", "gtdb_species": "s__Brevibacterium mcbrellneri", "ani": 100.0, "matched_fragments": 803, "total_fragments": 808, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_016907735.1", "gtdb_species": 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacterium", "mcbrellneri", "ATCC", "49030" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }