# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence02:132..>1197(-)	partial			WP_011460717.1	IS4 family transposase	96.9	74.4	30.3
MGA_4	LOCUS_00030	sequence03:248..613(-)	partial			WP_011101571.1	restriction endonuclease	89.3	34.4	50.9
MGA_8	LOCUS_00070	sequence04:1..747(+)	frameshift,internal_stop_codon	1031..1033(+)	720	WP_117118503.1	IS3 family transposase	96.8	61.0	43.3
MGA_9	LOCUS_00080	sequence04:725..1033(+)	frameshift,internal_stop_codon	1031..1033(+)	720	WP_154549573.1	IS3 family transposase	100.0	24.0	68.6
MGA_10	LOCUS_00090	sequence04:1088..1309(+)	internal_stop_codon	1031..1033(+)		WP_165492900.1	IS3 family transposase	100.0	18.1	63.0
MGA_16	LOCUS_00140	sequence05:3444..3614(-)	partial			WP_013853658.1	FAD-dependent oxidoreductase	98.2	13.9	60.7
MGA_17	LOCUS_00150	sequence05:3777..4358(-)	frameshift,internal_stop_codon	4404..4406(-)	4422	WP_015943875.1	DUF554 domain-containing protein	96.4	82.2	49.5
MGA_23	LOCUS_00200	sequence07:200..772(-)	frameshift		827	WP_010932591.1	DEAD/DEAH box helicase family protein	84.2	16.0	38.5
MGA_29	LOCUS_00260	sequence07:6865..7068(-)	internal_stop_codon	6865..6867(-),7105..7107(-)		WP_011241777.1	recombinase family protein	100.0	34.5	98.5
MGA_30	LOCUS_00270	sequence07:7752..8444(+)	partial			WP_002289238.1	collagen-binding MSCRAMM adhesin Acm	52.2	16.2	42.6
MGA_34	LOCUS_00310	sequence07:11461..11631(+)	partial			WP_002287733.1	restriction endonuclease subunit S	80.4	10.9	77.8
MGA_84	LOCUS_00810	sequence08:52935..53612(+)	internal_stop_codon	52728..52730(+)		WP_011476411.1	glutamate/gamma-aminobutyrate family transporter YjeM	67.6	30.6	58.6
MGA_97	LOCUS_00940	sequence08:65969..66850(+)	frameshift		66829	WP_011254206.1	amino acid permease	98.0	66.1	82.9
MGA_98	LOCUS_00950	sequence08:66844..67293(+)	frameshift		66829	WP_011254206.1	amino acid permease	91.3	31.3	80.1
MGA_101	LOCUS_00980	sequence08:69445..69816(-)	frameshift		69793	WP_003546429.1	nitroreductase	95.1	53.7	73.5
MGA_102	LOCUS_00990	sequence08:69791..70102(-)	frameshift		69793	WP_003546429.1	nitroreductase	100.0	47.2	67.0
MGA_111	LOCUS_01080	sequence08:79964..80131(+)	frameshift,internal_stop_codon	79763..79765(+),80130..80132(+)	79867,79684	WP_003546400.1	DeoR/GlpR family DNA-binding transcription regulator	100.0	21.7	43.6
MGA_125	LOCUS_01220	sequence08:91929..92315(-)	frameshift		91973	WP_003546364.1	ECF transporter S component	96.1	64.1	79.7
MGA_126	LOCUS_01230	sequence08:92493..92678(-)	partial			WP_011254194.1	ABC transporter ATP-binding protein	100.0	10.4	86.9
MGA_130	LOCUS_01270	sequence08:96354..96701(-)	internal_stop_codon	96786..96788(-)		WP_012775247.1	DUF3955 domain-containing protein	99.1	72.8	48.7
MGA_136	LOCUS_01330	sequence08:102301..103287(+)	internal_stop_codon	103285..103287(+)		WP_010774201.1	site-specific DNA-methyltransferase	74.1	66.1	41.9
MGA_151	LOCUS_01480	sequence08:115374..115823(-)	frameshift		115864	WP_009550763.1	hypothetical protein	100.0	80.5	96.6
MGA_153	LOCUS_01500	sequence08:117667..117903(-)	frameshift		117902	WP_003547510.1	adenylate kinase	98.7	47.2	49.4
MGA_168	LOCUS_01650	sequence08:135287..137308(-)	frameshift		137325	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	99.6	75.3	82.2
MGA_169	LOCUS_01660	sequence08:137323..137949(-)	frameshift		137325	WP_003546265.1	calcium-translocating P-type ATPase, PMCA-type	99.5	23.4	80.3
MGA_178	LOCUS_01750	sequence08:146886..147116(-)	partial			WP_011475674.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	59.2	11.5	84.4
MGA_183	LOCUS_01800	sequence08:150093..150953(-)	partial			WP_003546206.1	SEC10/PgrA surface exclusion domain-containing protein	91.3	71.8	61.7
MGA_190	LOCUS_01870	sequence08:154512..154922(+)	partial			WP_010905975.1	phosphate-starvation-inducible protein PsiE	72.1	68.5	39.8
MGA_195	LOCUS_01920	sequence08:158555..159055(+)	partial			WP_111723554.1	IS3-like element ISHin1 family transposase	65.1	23.8	51.9
MGA_196	LOCUS_01930	sequence08:159059..160438(-)	partial			WP_011254515.1	YSIRK-type signal peptide-containing protein	68.8	38.2	24.2
MGA_215	LOCUS_02090	sequence13:1147..1356(+)	partial			WP_015703865.1	IS200/IS605 family transposase	97.1	49.3	41.2
MGA_223	LOCUS_02170	sequence13:7365..7757(+)	partial			WP_003549854.1	C40 family peptidase	55.4	29.0	51.3
MGA_227	LOCUS_02210	sequence13:11814..12194(+)	frameshift		12158	WP_003549864.1	Wzz/FepE/Etk N-terminal domain-containing protein	88.9	38.8	70.8
MGA_228	LOCUS_02220	sequence13:12260..12676(+)	frameshift		12158	WP_003549864.1	Wzz/FepE/Etk N-terminal domain-containing protein	100.0	49.1	65.0
MGA_237	LOCUS_02270	sequence16:1659..2057(+)	frameshift		1608	WP_003547489.1	YoaK family protein	95.5	53.6	46.0
MGA_259	LOCUS_02470	sequence18:71..295(-)	frameshift		326	WP_003547484.1	peptidylprolyl isomerase	100.0	37.2	71.6
MGA_260	LOCUS_02480	sequence18:300..656(-)	frameshift		326	WP_003547484.1	peptidylprolyl isomerase	93.2	55.3	74.5
MGA_276	LOCUS_02640	sequence18:18714..19244(-)	partial			WP_003547129.1	sodium:proton antiporter	99.4	32.8	58.3
MGA_277	LOCUS_02650	sequence18:19250..19666(-)	frameshift		19722	WP_003547129.1	sodium:proton antiporter	100.0	25.9	47.1
MGA_278	LOCUS_02660	sequence18:19669..19938(-)	frameshift		19722	WP_003547129.1	sodium:proton antiporter	77.5	13.1	54.9
MGA_303	LOCUS_02910	sequence18:43324..43548(-)	partial			WP_003547057.1	lipopolysaccharide assembly protein LapA domain-containing protein	67.6	61.7	54.0
MGA_306	LOCUS_02940	sequence18:45301..45675(-)	internal_stop_codon	45682..45684(-)		WP_025015105.1	acyltransferase family protein	100.0	19.4	73.4
MGA_307	LOCUS_02950	sequence18:45682..46668(-)	internal_stop_codon	45682..45684(-)		WP_025015105.1	acyltransferase family protein	100.0	51.5	65.0
MGA_321	LOCUS_03080	sequence19:13016..13339(+)	partial			WP_011254059.1	DNA-3-methyladenine glycosylase I	80.4	45.3	58.1
MGA_338	LOCUS_03250	sequence19:30723..30944(-)	frameshift		30688	WP_003548719.1	ABC transporter substrate-binding protein/permease	65.8	9.8	62.5
MGA_342	LOCUS_03290	sequence19:33877..34329(-)	frameshift		34385	WP_003642965.1	SDR family oxidoreductase	100.0	70.3	60.0
MGA_369	LOCUS_03560	sequence20:8959..>10536(-)	partial			WP_011254396.1	translation initiation factor IF-2	100.0	59.9	91.4
MGA_373	LOCUS_03590	sequence22:769..1032(+)	internal_stop_codon	1030..1032(+)		WP_050340461.1	site-specific integrase	100.0	44.6	97.7
MGA_374	LOCUS_03600	sequence22:1144..1356(+)	internal_stop_codon	1030..1032(+)		WP_050340461.1	site-specific integrase	100.0	35.9	94.3
MGA_376	LOCUS_03620	sequence22:2123..2296(+)	partial			WP_010625611.1	hypothetical protein	91.2	74.3	92.3
MGA_377	LOCUS_03630	sequence22:2451..2666(-)	partial			WP_103152732.1	IS5 family transposase	100.0	27.1	98.6
MGA_380	LOCUS_03660	sequence22:5938..6168(-)	frameshift,internal_stop_codon	5938..5940(-),6199..6201(-)	6337	WP_002291207.1	multidrug efflux MFS transporter EfmA	98.7	17.5	57.3
MGA_381	LOCUS_03670	sequence22:6329..6823(-)	frameshift,internal_stop_codon	6198..6200(-)	6699,6333	WP_187289197.1	MFS transporter	65.9	25.4	56.5
MGA_382	LOCUS_03680	sequence22:6983..7186(-)	partial			WP_011241757.1	MobQ family relaxase	59.7	5.8	92.5
MGA_385	LOCUS_03710	sequence22:10709..10978(+)	frameshift		10554	WP_003644345.1	universal stress protein	95.5	55.3	45.3
MGA_386	LOCUS_03720	sequence22:11205..11564(-)	partial			WP_016381870.1	hypothetical protein	100.0	70.8	99.2
MGA_388	LOCUS_03740	sequence22:11993..12469(-)	partial			WP_061777522.1	hypothetical protein	100.0	62.5	91.8
MGA_389	LOCUS_03750	sequence22:12512..12703(-)	internal_stop_codon	12722..12724(-)		WP_116878224.1	IS982 family transposase	90.5	22.0	51.7
MGA_404	LOCUS_03890	sequence24:1..541(+)	frameshift		415	WP_003549336.1	DegV family protein	76.0	44.0	73.5
MGA_405	LOCUS_03900	sequence24:460..660(+)	frameshift		415	WP_003549336.1	DegV family protein	98.5	21.0	67.7
MGA_412	LOCUS_03970	sequence25:7204..7734(-)	partial			WP_003549794.1	DeoR/GlpR family DNA-binding transcription regulator	77.3	54.2	77.9
MGA_437	LOCUS_04220	sequence25:32461..32847(-)	frameshift,internal_stop_codon	32978..32980(-),32472..32474(-)	32845,32438	WP_011254026.1	IS1182 family transposase	50.8	11.4	78.5
MGA_438	LOCUS_04230	sequence25:32783..32974(-)	frameshift,internal_stop_codon	32978..32980(-)	32845	WP_011254026.1	IS1182 family transposase	82.5	9.2	50.0
MGA_439	LOCUS_04240	sequence25:32978..33154(-)	frameshift,internal_stop_codon	32978..32980(-)	32845	WP_011254026.1	IS1182 family transposase	98.3	10.0	63.2
MGA_451	LOCUS_04330	sequence27:1167..1835(-)	partial			WP_003549951.1	hypothetical protein	90.5	57.6	33.7
MGA_457	LOCUS_04390	sequence27:5849..6241(-)	internal_stop_codon	6278..6280(-)		WP_003547397.1	L,D-transpeptidase	97.7	62.9	75.6
MGA_462	LOCUS_04440	sequence27:10321..10605(-)	frameshift,internal_stop_codon	10321..10323(-)	10621	WP_011101592.1	DHA2 family efflux MFS transporter permease subunit	97.9	19.8	38.0
MGA_463	LOCUS_04450	sequence27:10577..10954(-)	frameshift,internal_stop_codon	11000..11002(-),10321..10323(-)	10621	WP_011101592.1	DHA2 family efflux MFS transporter permease subunit	60.0	16.2	44.0
MGA_464	LOCUS_04460	sequence27:11000..11218(-)	internal_stop_codon	11000..11002(-)		WP_011101592.1	DHA2 family efflux MFS transporter permease subunit	88.9	13.8	57.8
MGA_467	LOCUS_04490	sequence27:13532..14455(+)	partial			WP_003547408.1	DNA/RNA non-specific endonuclease	63.5	69.4	64.6
MGA_468	LOCUS_04500	sequence27:14478..14753(-)	partial			WP_011254095.1	hypothetical protein	67.0	67.7	47.8
MGA_469	LOCUS_04510	sequence27:14760..>15277(-)	partial			WP_000858661.1	class I SAM-dependent methyltransferase	91.2	63.3	42.8
MGA_476	LOCUS_04580	sequence28:5375..5545(+)	internal_stop_codon	5543..5545(+),5174..5176(+),5321..5323(+),5564..5566(+),5315..5317(+)		WP_003546985.1	HAD-IC family P-type ATPase	98.2	6.9	62.5
MGA_477	LOCUS_04590	sequence28:5579..6754(+)	internal_stop_codon	5543..5545(+),5564..5566(+)		WP_003546985.1	HAD-IC family P-type ATPase	99.7	48.4	73.6
MGA_484	LOCUS_04660	sequence28:13016..13861(+)	internal_stop_codon	13859..13861(+)		WP_011254524.1	Rib/alpha-like domain-containing protein	98.9	16.2	31.2
MGA_501	LOCUS_04830	sequence28:27639..27821(+)	internal_stop_codon	27819..27821(+),27600..27602(+)		WP_011475480.1	Rpn family recombination-promoting nuclease/putative transposase	100.0	23.6	44.3
MGA_502	LOCUS_04840	sequence28:27825..28253(+)	internal_stop_codon	27819..27821(+),27600..27602(+)		WP_011475480.1	Rpn family recombination-promoting nuclease/putative transposase	84.5	48.0	29.5
MGA_508	LOCUS_04890	sequence29:1422..1664(-)	frameshift		1680	WP_003547344.1	NUDIX hydrolase	100.0	38.6	62.5
MGA_509	LOCUS_04900	sequence29:1675..2046(-)	frameshift		1680	WP_003547344.1	NUDIX hydrolase	98.4	58.5	70.2
MGA_513	LOCUS_04940	sequence29:3612..4157(-)	partial			WP_011102090.1	SDR family oxidoreductase	70.7	50.9	32.2
MGA_519	LOCUS_04990	sequence31:1647..1937(+)	partial			WP_011254394.1	GNAT family N-acetyltransferase	90.6	58.8	54.0
MGA_520	LOCUS_05000	sequence31:2100..2444(+)	partial			WP_106663664.1	SDR family oxidoreductase	86.8	39.8	43.4
MGA_528	LOCUS_05070	sequence32:248..406(-)	frameshift		467	WP_003549562.1	amino acid permease	92.3	10.7	64.6
MGA_529	LOCUS_05080	sequence32:387..1268(-)	frameshift		1377,1338,465	WP_003549562.1	amino acid permease	91.1	59.5	80.1
MGA_535	LOCUS_05140	sequence32:4762..4971(-)	partial			WP_003549308.1	AAC(3) family N-acetyltransferase	72.5	18.2	70.0
MGA_538	LOCUS_05170	sequence32:6118..7110(+)	frameshift		7092	WP_003550020.1	peptide ABC transporter substrate-binding protein	99.1	59.7	77.1
MGA_539	LOCUS_05180	sequence32:7148..7762(+)	frameshift		7098	WP_003550020.1	peptide ABC transporter substrate-binding protein	100.0	37.4	77.5
MGA_545	LOCUS_05240	sequence32:14523..14795(+)	frameshift		14705,14834,14539	WP_034532906.1	kinase	61.1	33.7	67.3
MGA_547	LOCUS_05260	sequence32:15580..15813(+)	frameshift		15756	WP_003547349.1	DUF6176 family protein	76.6	49.6	67.8
MGA_550	LOCUS_05290	sequence32:17012..17278(-)	frameshift,internal_stop_codon	17021..17023(-)	17071	WP_052846195.1	sulfite exporter TauE/SafE family protein	65.9	22.4	48.3
MGA_553	LOCUS_05320	sequence32:19356..19487(+)	partial			WP_003547891.1	oligopeptide ABC transporter substrate-binding protein	90.7	6.6	64.1
MGA_554	LOCUS_05330	sequence32:19703..19957(+)	partial			WP_003549915.1	hypothetical protein	88.1	23.6	52.7
MGA_556	LOCUS_05350	sequence32:21675..23336(+)	internal_stop_codon	23334..23336(+)		WP_003641095.1	RNA degradosome polyphosphate kinase	97.3	74.9	62.2
MGA_557	LOCUS_05360	sequence32:23349..23864(+)	internal_stop_codon	23334..23336(+)		WP_003641095.1	RNA degradosome polyphosphate kinase	77.2	18.5	66.2
MGA_560	LOCUS_05390	sequence32:26924..27175(+)	frameshift		27133	WP_011254509.1	FMN-dependent dehydrogenase	95.2	23.2	62.0
MGA_561	LOCUS_05400	sequence32:27254..27439(+)	frameshift		27215	WP_011101819.1	homoserine O-succinyltransferase	95.1	19.9	48.3
MGA_566	LOCUS_05450	sequence32:33307..33534(+)	partial			WP_003547296.1	SLAP domain-containing protein	94.7	17.9	60.6
MGA_567	LOCUS_05460	sequence32:33544..33744(+)	partial			WP_002679543.1	carbon-nitrogen hydrolase family protein	93.9	21.0	48.4
MGA_568	LOCUS_05470	sequence32:33833..34270(+)	partial			WP_010957047.1	carbon-nitrogen hydrolase family protein	97.9	47.5	65.5
MGA_573	LOCUS_05520	sequence32:38672..39295(+)	partial			WP_003549732.1	CPBP family intramembrane metalloprotease	94.7	49.2	35.0
MGA_575	LOCUS_05540	sequence32:40931..41257(-)	partial			WP_050340461.1	site-specific integrase	86.1	47.7	69.9
MGA_597	LOCUS_05740	sequence35:12511..12969(-)	frameshift		12935	WP_011254608.1	GMP reductase	92.1	42.4	90.0
MGA_598	LOCUS_05750	sequence35:12909..13505(-)	frameshift		12935	WP_011254608.1	GMP reductase	99.0	58.5	87.8
MGA_603	LOCUS_05800	sequence35:17890..18042(+)	frameshift,internal_stop_codon	18040..18042(+)	18264,18319	WP_003549600.1	DMT family transporter	98.0	15.9	73.5
MGA_607	LOCUS_05840	sequence35:21821..22012(+)	partial			WP_003548701.1	helix-turn-helix transcriptional regulator	100.0	23.4	38.1
MGA_619	LOCUS_05950	sequence36:2164..2700(-)	partial			WP_011476472.1	mannitol-1-phosphate 5-dehydrogenase	96.6	44.5	73.3
MGA_620	LOCUS_05960	sequence36:2601..4508(-)	frameshift		4571,4493	WP_011476476.1	helix-turn-helix domain-containing protein	92.1	84.9	48.7
MGA_636	LOCUS_06120	sequence36:19053..19403(-)	frameshift		19512,19419	WP_011254542.1	GNAT family N-acetyltransferase	100.0	62.0	65.5
MGA_642	LOCUS_06180	sequence36:25478..25708(-)	frameshift,internal_stop_codon	25734..25736(-)	25715	WP_012775361.1	membrane protein	96.1	13.2	36.8
MGA_647	LOCUS_06230	sequence37:1312..1440(-)	frameshift		1323	WP_011254522.1	NAD-dependent succinate-semialdehyde dehydrogenase	92.9	8.5	69.2
MGA_655	LOCUS_06310	sequence38:1812..2270(-)	frameshift		1820	WP_011254154.1	TIGR01906 family membrane protein	98.7	74.3	71.3
MGA_662	LOCUS_06380	sequence38:8039..8473(+)	internal_stop_codon	8471..8473(+),8009..8011(+)		WP_117118503.1	IS3 family transposase	92.4	31.6	41.6
MGA_663	LOCUS_06390	sequence38:8480..9094(+)	internal_stop_codon	8471..8473(+)		WP_154549573.1	IS3 family transposase	99.0	47.9	64.4
MGA_672	LOCUS_06480	sequence38:14368..14553(-)	frameshift,internal_stop_codon	14568..14570(-)	14810	WP_015613420.1	GHKL domain-containing protein	91.8	17.1	66.1
MGA_673	LOCUS_06490	sequence38:14569..14778(-)	frameshift,internal_stop_codon	14568..14570(-)	14816	WP_015613420.1	GHKL domain-containing protein	100.0	22.0	59.7
MGA_674	LOCUS_06500	sequence38:14784..15719(-)	frameshift,internal_stop_codon	14568..14570(-)	14816	WP_015613420.1	GHKL domain-containing protein	56.3	53.4	45.7
MGA_685	LOCUS_06610	sequence38:27636..28085(-)	partial			WP_015613305.1	preprotein translocase subunit YajC	65.1	73.7	68.7
MGA_708	LOCUS_06830	sequence39:1757..2557(+)	partial			WP_011254625.1	YdcF family protein	100.0	72.5	60.9
MGA_721	LOCUS_06960	sequence39:15760..16092(+)	internal_stop_codon	15718..15720(+)		WP_003549441.1	CopY/TcrY family copper transport repressor	100.0	75.3	70.9
MGA_728	LOCUS_07030	sequence39:24773..25006(+)	internal_stop_codon	25004..25006(+)		WP_003549932.1	glucose PTS transporter subunit IIA	98.7	11.5	65.8
MGA_729	LOCUS_07040	sequence39:25007..26251(+)	internal_stop_codon	25004..25006(+)		WP_003549932.1	glucose PTS transporter subunit IIA	98.1	60.3	77.6
MGA_741	LOCUS_07160	sequence40:2..787(+)	partial			WP_000106218.1	tetracycline efflux MFS transporter Tet(A)	98.9	60.8	74.4
MGA_755	LOCUS_07280	sequence42:13407..13973(+)	partial			WP_003566887.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	60.1	37.2	36.3
MGA_758	LOCUS_07300	sequence43:789..1367(+)	partial			WP_006586260.1	ABC transporter permease	78.6	24.7	49.0
MGA_762	LOCUS_07340	sequence43:5935..6171(+)	partial			WP_003550005.1	amino acid ABC transporter substrate-binding protein	100.0	28.7	73.1
MGA_768	LOCUS_07400	sequence43:9121..9375(+)	partial			WP_003550021.1	GNAT family N-acetyltransferase	51.2	25.1	67.4
MGA_769	LOCUS_07410	sequence43:9480..9662(-)	partial			WP_003550031.1	response regulator transcription factor	100.0	25.8	90.0
MGA_772	LOCUS_07440	sequence43:11866..12063(+)	internal_stop_codon	12150..12152(+)		WP_011254534.1	ABC transporter ATP-binding protein	87.7	10.7	87.7
MGA_773	LOCUS_07450	sequence43:12242..12571(+)	internal_stop_codon	12150..12152(+)		WP_011254534.1	ABC transporter ATP-binding protein	97.2	19.9	83.0
MGA_776	LOCUS_07480	sequence43:15143..15625(+)	partial			WP_003550047.1	LPXTG cell wall anchor domain-containing protein	93.8	16.4	37.8
MGA_778	LOCUS_07500	sequence43:17031..17219(+)	partial			WP_003550049.1	DUF3290 domain-containing protein	98.4	46.3	55.1
MGA_779	LOCUS_07510	sequence43:17203..17442(+)	partial			WP_003550051.1	DUF421 domain-containing protein	84.8	31.6	65.7
MGA_790	LOCUS_07620	sequence43:28358..29122(+)	frameshift		29020	WP_011254527.1	serine hydrolase	87.0	70.4	48.4
MGA_791	LOCUS_07630	sequence43:29010..29303(+)	frameshift		29020	WP_011254527.1	serine hydrolase	94.8	29.6	54.3
MGA_794	LOCUS_07660	sequence43:33672..33902(+)	frameshift		33779	WP_003550081.1	zinc ribbon domain-containing protein	44.7	9.8	76.5
MGA_797	LOCUS_07680	sequence44:3087..3500(-)	frameshift		3543	WP_003548818.1	glycerol-3-phosphate acyltransferase	100.0	66.8	67.2
MGA_798	LOCUS_07690	sequence44:3469..3702(-)	frameshift		3543	WP_003548818.1	glycerol-3-phosphate acyltransferase	68.8	25.9	75.5
MGA_808	LOCUS_07790	sequence44:13249..13815(+)	partial			WP_011254065.1	pore-forming S-layer protein SlpA	73.9	34.0	40.1
MGA_815	LOCUS_07840	sequence45:1852..2304(-)	partial			WP_003549107.1	ion channel	98.0	55.3	39.7
MGA_820	LOCUS_07890	sequence45:5019..5300(-)	frameshift		5269	WP_015613297.1	phosphate ABC transporter ATP-binding protein PstB	91.4	32.2	92.9
MGA_821	LOCUS_07900	sequence45:5240..5809(-)	frameshift		5269	WP_015613297.1	phosphate ABC transporter ATP-binding protein PstB	93.7	67.0	83.6
MGA_827	LOCUS_07960	sequence45:10082..10570(-)	frameshift		10102	WP_003549094.1	transcription termination/antitermination protein NusG	95.7	83.2	89.0
MGA_845	LOCUS_08140	sequence45:25629..25838(-)	frameshift		25840,25660,25536	WP_003549071.1	sulfite exporter TauE/SafE family protein	81.2	22.2	48.2
MGA_910	LOCUS_08790	sequence45:81868..82185(-)	frameshift		82243	WP_011254096.1	APC family permease	95.2	18.9	69.0
MGA_911	LOCUS_08800	sequence45:82118..83410(-)	frameshift		82243	WP_011254096.1	APC family permease	90.5	73.4	84.1
MGA_934	LOCUS_09030	sequence45:108398..109114(-)	internal_stop_codon	109157..109159(-),109262..109264(-)		WP_003548873.1	magnesium-translocating P-type ATPase	84.5	22.4	43.8
MGA_944	LOCUS_09130	sequence46:43..612(-)	frameshift		643	WP_011101842.1	ROK family protein	94.2	55.0	45.3
MGA_945	LOCUS_09140	sequence46:629..1009(-)	frameshift		643	WP_011948840.1	ROK family protein	90.5	36.1	50.9
MGA_961	LOCUS_09300	sequence48:940..1494(-)	frameshift		948	WP_015613420.1	GHKL domain-containing protein	97.3	54.9	51.4
MGA_966	LOCUS_09350	sequence48:4724..5221(+)	frameshift		5167	WP_003548446.1	hypothetical protein	98.8	73.0	41.2
MGA_971	LOCUS_09400	sequence48:9621..9773(+)	partial			WP_003706303.1	teichoic acid D-Ala incorporation-associated protein DltX	68.0	69.4	67.6
MGA_985	LOCUS_09540	sequence49:4035..4589(-)	partial			WP_011254066.1	SLAP domain-containing protein	89.1	34.8	41.5
MGA_990	LOCUS_09590	sequence49:7805..8320(-)	partial			WP_011254029.1	MBL fold metallo-hydrolase	70.2	46.8	72.6
MGA_1000	LOCUS_09690	sequence49:17678..18424(+)	internal_stop_codon	17558..17560(+)		WP_003548560.1	LysR family transcriptional regulator	65.7	76.1	35.2
MGA_1001	LOCUS_09700	sequence49:18437..18652(-)	frameshift		18648,18738,18876	WP_011254324.1	branched-chain amino acid transport system II carrier protein	91.5	14.3	53.8
MGA_1002	LOCUS_09710	sequence49:18941..19429(-)	frameshift,internal_stop_codon	19573..19575(-)	18960,18737,18875,19431	WP_011254324.1	branched-chain amino acid transport system II carrier protein	92.0	32.2	57.0
MGA_1003	LOCUS_09720	sequence49:19573..19692(-)	frameshift,internal_stop_codon	19573..19575(-)	19431	WP_011476479.1	branched-chain amino acid transport system II carrier protein	89.7	7.8	77.8
MGA_1006	LOCUS_09750	sequence50:3153..3971(+)	frameshift		3049	WP_003548323.1	adenosine deaminase	99.6	80.5	57.6
MGA_1019	LOCUS_09870	sequence51:1539..1733(-)	partial			WP_003564982.1	membrane protein insertion efficiency factor YidD	75.0	47.5	72.9
MGA_1028	LOCUS_09960	sequence51:8729..8953(-)	partial			WP_029779745.1	F0F1 ATP synthase subunit C	74.3	74.3	76.4
MGA_1039	LOCUS_10070	sequence51:19936..20223(-)	partial			WP_011254238.1	VanZ family protein	92.6	44.0	69.3
MGA_1052	LOCUS_10190	sequence52:4694..5047(+)	frameshift		5044	WP_011254163.1	carboxymuconolactone decarboxylase family protein	100.0	48.1	82.1
MGA_1053	LOCUS_10200	sequence52:5056..5415(+)	frameshift		5044	WP_011254163.1	carboxymuconolactone decarboxylase family protein	100.0	49.0	75.6
MGA_1054	LOCUS_10210	sequence52:5506..6201(-)	internal_stop_codon	6253..6255(-)		WP_003546143.1	phosphoenolpyruvate carboxykinase (ATP)	100.0	41.8	92.2
MGA_1055	LOCUS_10220	sequence52:6253..7164(-)	internal_stop_codon	6253..6255(-)		WP_003546143.1	phosphoenolpyruvate carboxykinase (ATP)	100.0	54.9	91.1
MGA_1061	LOCUS_10280	sequence52:13310..13573(+)	frameshift,internal_stop_codon	13859..13861(+)	13714,13726,13519	WP_010905248.1	ABC transporter ATP-binding protein	78.2	11.1	50.0
MGA_1062	LOCUS_10290	sequence52:13976..14365(+)	frameshift,internal_stop_codon	13721..13723(+),13940..13942(+),13856..13858(+)	13713	WP_011475588.1	ABC transporter ATP-binding protein	86.0	19.1	59.5
MGA_1065	LOCUS_10320	sequence52:16373..16579(+)	frameshift		16480	WP_196835716.1	adenine-specific methyltransferase EcoRI family protein	48.5	7.2	66.7
MGA_1066	LOCUS_10330	sequence52:16483..16776(+)	frameshift		16480	WP_196835716.1	adenine-specific methyltransferase EcoRI family protein	90.7	20.5	45.4
MGA_1068	LOCUS_10350	sequence52:17684..17905(-)	frameshift		18032,18092	WP_165492900.1	IS3 family transposase	100.0	18.1	80.8
MGA_1069	LOCUS_10360	sequence52:18021..19013(-)	frameshift		18032,18092	WP_165492900.1	IS3 family transposase	75.5	62.5	59.1
MGA_1073	LOCUS_10400	sequence54:63..455(-)	frameshift,internal_stop_codon	544..546(-)	486	WP_051523200.1	helix-turn-helix transcriptional regulator	98.5	75.3	71.8
MGA_1090	LOCUS_10570	sequence54:10308..10574(-)	frameshift		10615	WP_010905898.1	MFS transporter	93.2	17.8	52.4
MGA_1091	LOCUS_10580	sequence54:10592..10834(-)	frameshift		10606	WP_011673958.1	MFS transporter	77.5	13.6	41.9
MGA_1092	LOCUS_10590	sequence54:10827..11324(-)	internal_stop_codon	11340..11342(-)		WP_003548076.1	GyrI-like domain-containing protein	95.8	76.0	67.1
MGA_1093	LOCUS_10600	sequence54:11340..11474(-)	internal_stop_codon	11340..11342(-)		WP_003548076.1	GyrI-like domain-containing protein	100.0	21.2	65.9
MGA_1102	LOCUS_10690	sequence56:1830..2384(+)	frameshift,internal_stop_codon	1735..1737(+)	1821	WP_003549893.1	IS110 family transposase	84.8	38.2	41.0
MGA_1120	LOCUS_10870	sequence57:2951..3235(+)	partial			WP_068990772.1	IS66-like element short variant transposase	100.0	21.1	69.5
MGA_1124	LOCUS_10900	sequence58:1372..1866(+)	internal_stop_codon	1864..1866(+)		WP_003549632.1	sugar ABC transporter permease	100.0	36.3	82.3
MGA_1125	LOCUS_10910	sequence58:1870..2730(+)	internal_stop_codon	1864..1866(+)		WP_003549632.1	sugar ABC transporter permease	100.0	63.3	91.6
MGA_1127	LOCUS_10930	sequence58:3662..3835(+)	partial			WP_011476527.1	Cof-type HAD-IIB family hydrolase	93.0	19.9	52.8
MGA_1128	LOCUS_10940	sequence58:3885..4055(+)	partial			WP_011836481.1	Cof-type HAD-IIB family hydrolase	100.0	20.3	60.7
MGA_1141	LOCUS_11060	sequence59:150..440(+)	frameshift,internal_stop_codon	447..449(+),96..98(+)	434,407	WP_011254296.1	DedA family protein	90.6	42.6	62.1
MGA_1142	LOCUS_11070	sequence59:514..639(+)	frameshift,internal_stop_codon	447..449(+)	434,410	WP_011254296.1	DedA family protein	97.6	19.6	50.0
MGA_1143	LOCUS_11080	sequence59:656..1711(+)	frameshift		1666	WP_015613351.1	amino acid permease	97.4	74.2	73.4
MGA_1144	LOCUS_11090	sequence59:1717..2040(+)	frameshift		1666	WP_015613351.1	amino acid permease	98.1	22.8	67.6
MGA_1163	LOCUS_11260	sequence61:16618..17079(-)	frameshift,internal_stop_codon	17143..17145(-)	16629	WP_003547855.1	uracil-DNA glycosylase	98.0	68.5	72.0
MGA_1187	LOCUS_11500	sequence61:41154..41297(-)	frameshift		41289	WP_003547912.1	hypothetical protein	100.0	46.5	70.2
MGA_1188	LOCUS_11510	sequence61:41245..41460(-)	frameshift		41289	WP_003547912.1	hypothetical protein	98.6	69.3	55.7
MGA_1212	LOCUS_11750	sequence61:61870..62274(-)	partial			WP_003547954.1	YitT family protein	92.5	44.6	62.4
MGA_1216	LOCUS_11790	sequence61:64741..65244(-)	internal_stop_codon	65263..65265(-)		WP_011101349.1	accessory Sec system glycosyltransferase Asp1	93.4	30.5	40.4
MGA_1228	LOCUS_11910	sequence61:79522..79893(+)	frameshift		79849,79486	WP_011254446.1	ClC family H(+)/Cl(-) exchange transporter	93.5	25.7	67.0
MGA_1229	LOCUS_11920	sequence61:79868..80656(+)	frameshift		79848	WP_011254446.1	ClC family H(+)/Cl(-) exchange transporter	99.6	58.3	66.3
MGA_1252	LOCUS_12150	sequence61:101457..102599(+)	partial			WP_003548276.1	YfhO family protein	98.4	44.0	39.4
MGA_1281	LOCUS_12440	sequence61:129931..130503(+)	internal_stop_codon	130501..130503(+)		WP_004270929.1	IS30 family transposase	94.2	53.9	40.0
MGA_1282	LOCUS_12450	sequence61:130570..130833(+)	frameshift,internal_stop_codon	130501..130503(+)	130827	WP_010956682.1	IS30-like element ISTde2 family transposase	98.9	25.7	43.5
MGA_1286	LOCUS_12490	sequence61:133462..134718(-)	internal_stop_codon	134725..134727(-)		WP_002352327.1	FAD-dependent oxidoreductase	95.0	83.9	30.0
MGA_1288	LOCUS_12510	sequence61:134955..135896(-)	partial			WP_179238099.1	FAD-binding protein	77.0	38.5	34.4
MGA_1293	LOCUS_12560	sequence61:139181..139588(-)	partial			WP_011705524.1	LysR family transcriptional regulator	67.4	30.9	31.9
MGA_1294	LOCUS_12570	sequence61:139632..143084(-)	partial			WP_000401853.1	helicase-related protein	73.1	80.3	24.3
MGA_1295	LOCUS_12580	sequence61:143084..146560(-)	partial			WP_010891879.1	Eco57I restriction-modification methylase domain-containing protein	58.2	58.7	26.3
MGA_1299	LOCUS_12620	sequence61:150134..151264(-)	partial			WP_003548356.1	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	95.7	70.2	95.8
MGA_1301	LOCUS_12640	sequence61:153024..153710(-)	frameshift		153745,153950	WP_011254010.1	C69 family dipeptidase	98.7	51.5	75.0
MGA_1302	LOCUS_12650	sequence61:153927..154085(-)	frameshift		153745,153950	WP_011254010.1	C69 family dipeptidase	86.5	9.7	95.6
MGA_1326	LOCUS_12890	sequence61:177193..177333(-)	frameshift		177204	WP_003548490.1	cupin domain-containing protein	78.3	26.3	75.0
MGA_1350	LOCUS_13100	sequence63:8082..8234(+)	frameshift		8201,8268	WP_003546764.1	pseudouridine synthase	80.0	16.9	77.5
MGA_1351	LOCUS_13110	sequence63:8271..8792(+)	frameshift		8201,8268	WP_003546764.1	pseudouridine synthase	100.0	73.3	68.2
MGA_1371	LOCUS_13310	sequence63:29097..29378(+)	partial			WP_010906174.1	YggT family protein	75.3	72.5	42.9
MGA_1388	LOCUS_13480	sequence63:44281..44610(-)	frameshift		44663	WP_003546833.1	YegS/Rv2252/BmrU family lipid kinase	98.2	34.0	59.8
MGA_1389	LOCUS_13490	sequence63:44628..45029(-)	frameshift		44662,45103	WP_003546833.1	YegS/Rv2252/BmrU family lipid kinase	91.0	38.4	59.5
MGA_1412	LOCUS_13720	sequence63:69834..69980(-)	partial			WP_003549428.1	SPJ_0845 family protein	58.3	57.1	85.7
MGA_1427	LOCUS_13860	sequence64:11788..12429(-)	partial			WP_091620756.1	oxidoreductase	93.0	69.8	45.7
MGA_1429	LOCUS_13880	sequence64:13657..13971(+)	partial			WP_011254380.1	sugar O-acetyltransferase	100.0	51.0	74.0
MGA_1431	LOCUS_13900	sequence64:15806..16273(+)	frameshift		15821	WP_002321171.1	2-hydroxyacid dehydrogenase	94.2	45.9	41.8
MGA_1433	LOCUS_13920	sequence64:17321..17455(+)	partial			WP_003547446.1	hypothetical protein	100.0	74.6	77.3
MGA_1434	LOCUS_13930	sequence64:17576..17893(+)	internal_stop_codon	17453..17455(+)		WP_014565877.1	flavodoxin	94.3	27.3	72.8
MGA_1437	LOCUS_13960	sequence64:21177..21473(+)	partial			WP_003548117.1	MFS transporter	61.2	15.3	66.7
MGA_1438	LOCUS_13970	sequence64:21485..21817(+)	partial			WP_003548117.1	MFS transporter	90.0	25.8	55.4
MGA_1460	LOCUS_14190	sequence64:36395..37102(+)	partial			WP_004255227.1	biotin--[acetyl-CoA-carboxylase] ligase	98.3	74.6	42.3
MGA_1462	LOCUS_14210	sequence64:39408..39851(+)	partial			WP_011254202.1	Cof-type HAD-IIB family hydrolase	93.9	51.3	60.1
MGA_1464	LOCUS_14230	sequence64:40876..41142(+)	partial			WP_011254318.1	YSIRK-type signal peptide-containing protein	67.0	2.6	42.4
MGA_1470	LOCUS_14290	sequence64:45213..46265(+)	partial			WP_011476405.1	C39 family peptidase	67.7	26.8	44.4
MGA_1471	LOCUS_14300	sequence65:85..354(-)	frameshift,internal_stop_codon	542..544(-)	454	WP_003549893.1	IS110 family transposase	88.8	19.4	91.1
MGA_1472	LOCUS_14310	sequence65:716..943(-)	frameshift,internal_stop_codon	542..544(-)	739,460,709	WP_003549893.1	IS110 family transposase	92.0	16.9	87.0
MGA_1478	LOCUS_14360	sequence67:1101..1907(+)	partial			WP_009966620.1	coupling conjugation protein ConQ	72.4	39.4	33.3
MGA_1487	LOCUS_14450	sequence67:8475..10037(-)	frameshift		10125	WP_003549289.1	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	100.0	69.9	85.6
MGA_1488	LOCUS_14460	sequence67:10120..10689(-)	frameshift		10128	WP_003549289.1	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	99.5	25.4	89.9
MGA_1506	LOCUS_14640	sequence67:26716..27000(+)	internal_stop_codon	26998..27000(+)		WP_003549250.1	amino acid permease	97.9	19.2	90.2
MGA_1507	LOCUS_14650	sequence67:27007..28149(+)	internal_stop_codon	26998..27000(+)		WP_003549250.1	amino acid permease	100.0	79.2	75.5
MGA_1510	LOCUS_14680	sequence67:32303..32677(-)	partial			WP_011674878.1	DUF2075 domain-containing protein	95.2	28.9	50.8
MGA_1512	LOCUS_14690	sequence69:6..449(-)	internal_stop_codon	450..452(-)		WP_011254294.1	2-hydroxyacid dehydrogenase family protein	99.3	46.7	56.0
MGA_1513	LOCUS_14700	sequence69:450..581(-)	internal_stop_codon	450..452(-)		WP_011254294.1	2-hydroxyacid dehydrogenase family protein	100.0	13.4	74.4
MGA_1515	LOCUS_14720	sequence69:1572..2102(-)	frameshift,internal_stop_codon	1571..1573(-)	2057,2163,2135	WP_003547045.1	aldo/keto reductase	92.0	59.8	73.5
MGA_1527	LOCUS_14840	sequence70:4637..4939(-)	partial			WP_011948690.1	FAD-binding oxidoreductase	94.0	20.2	50.0
MGA_1528	LOCUS_14850	sequence70:5014..5364(+)	frameshift		5328	WP_011254465.1	MDR family MFS transporter	94.0	22.2	88.1
MGA_1529	LOCUS_14860	sequence70:5334..5969(+)	frameshift,internal_stop_codon	5968..5970(+)	5328,6156	WP_011254465.1	MDR family MFS transporter	99.5	42.9	88.1
MGA_1530	LOCUS_14870	sequence70:5973..6173(+)	frameshift,internal_stop_codon	5967..5969(+)	6155	WP_011254465.1	MDR family MFS transporter	98.5	13.3	86.2
MGA_1531	LOCUS_14880	sequence70:6170..6484(+)	frameshift,internal_stop_codon	5967..5969(+)	6158	WP_011254465.1	MDR family MFS transporter	99.0	21.0	89.3
MGA_1533	LOCUS_14900	sequence70:7079..10351(-)	partial			WP_007058870.1	DEAD/DEAH box helicase	68.0	59.3	38.1
MGA_1537	LOCUS_14940	sequence70:13712..14221(-)	internal_stop_codon	14264..14266(-)		WP_003547186.1	serine hydrolase	50.9	23.9	58.6
MGA_1538	LOCUS_14950	sequence70:14264..14587(-)	internal_stop_codon	14264..14266(-)		WP_003547186.1	serine hydrolase	74.8	22.0	56.2
MGA_1544	LOCUS_15010	sequence70:20982..22250(+)	partial			WP_000145511.1	replication initiation protein	50.9	73.1	30.4
MGA_1551	LOCUS_15080	sequence70:28377..28601(+)	internal_stop_codon	28599..28601(+)		WP_003547989.1	alpha/beta hydrolase	94.6	23.5	61.4
MGA_1552	LOCUS_15090	sequence70:28644..29273(+)	internal_stop_codon	28599..28601(+)		WP_003547989.1	alpha/beta hydrolase	100.0	69.8	55.2
MGA_1558	LOCUS_15150	sequence70:34141..34743(+)	internal_stop_codon	34048..34050(+)		WP_003549462.1	Cof-type HAD-IIB family hydrolase	99.5	76.3	43.8
MGA_1560	LOCUS_15170	sequence70:36702..37724(+)	internal_stop_codon	37722..37724(+)		WP_011254634.1	peptide ABC transporter substrate-binding protein	100.0	62.5	85.0
MGA_1561	LOCUS_15180	sequence70:37725..38333(+)	internal_stop_codon	37722..37724(+)		WP_011254634.1	peptide ABC transporter substrate-binding protein	99.0	36.9	85.0
MGA_1572	LOCUS_15290	sequence70:49106..49288(+)	frameshift		49285	WP_003546204.1	peptidoglycan-binding protein	56.7	14.7	82.4
MGA_1575	LOCUS_15320	sequence70:51648..52481(+)	partial			WP_003644407.1	lipoprotein	76.9	73.8	36.9
MGA_1609	LOCUS_15620	sequence73:34173..34577(-)	frameshift		34687	WP_003547606.1	peptidase T	100.0	32.3	91.8
MGA_1610	LOCUS_15630	sequence73:34607..35404(-)	frameshift		34687	WP_003547606.1	peptidase T	89.8	57.3	94.1
MGA_1613	LOCUS_15660	sequence73:37032..37208(+)	frameshift		37181	WP_003547614.1	8-oxo-dGTP diphosphatase	86.2	34.2	86.0
MGA_1614	LOCUS_15670	sequence73:37174..37458(+)	frameshift		37181	WP_003547614.1	8-oxo-dGTP diphosphatase	97.9	63.0	70.7
MGA_1627	LOCUS_15800	sequence73:49656..49862(+)	partial			WP_003547715.1	M23 family metallopeptidase	60.3	19.2	61.0