{ "type": "genome", "identifier": "GCF_000178855.1", "organism": "Ktedonobacter racemifer DSM 44963", "title": "Ktedonobacter racemifer DSM 44963", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000178855.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441796", "wgs_master": "ADVG00000000.1", "refseq_category": "reference genome", "taxid": "485913", "species_taxid": "363277", "organism_name": "Ktedonobacter racemifer DSM 44963", "infraspecific_name": "strain=SOSP1-21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/06/04", "asm_name": "ASM17885v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000178855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/178/855/GCF_000178855.1_ASM17885v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "13661586", "genome_size_ungapped": "13661541", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000178855.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "12107", "protein_coding_gene_count": "11536", "non_coding_gene_count": "88", "pubmed_id": "22180814" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-06-04", "dateModified": "2010-06-04", "datePublished": "2010-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Ktedonobacter racemifer DSM 44963" ], "sample_taxid": [ "485913" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Gerenzano" ], "sample_host_location_id": [], "data_size": "3.890 MB", "sample_ph_range": { "min": 4868.0, "max": 4868.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.48, "strain_heterogeneity": 83.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "13661586", "Number of Sequences": "10", "Longest Sequences (bp)": "3837106", "N50 (bp)": "2766182", "Gap Ratio (%)": "0.000329", "GCcontent (%)": "53.8", "Number of CDSs": "12680", "Average Protein Length": "285.6", "Coding Ratio (%)": "79.5", "Number of rRNAs": "23", "Number of tRNAs": "64", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ktedonobacter racemifer", "strain": "strain=SOSP1-21", "accession": "GCA_000178855.1", "taxid": 363277, 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