{ "type": "genome", "identifier": "GCF_000178955.2", "organism": "Granulicella mallensis MP5ACTX8", "title": "Granulicella mallensis MP5ACTX8", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000178955.2", "bioproject": "PRJNA224116", "biosample": "SAMN02232025", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "682795", "species_taxid": "940614", "organism_name": "Granulicella mallensis MP5ACTX8", "infraspecific_name": "strain=MP5ACTX8", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/12/01", "asm_name": "ASM17895v2", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000178955.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/178/955/GCF_000178955.2_ASM17895v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6237577", "genome_size_ungapped": "6237577", "gc_percent": "58.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000178955.2-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4852", "protein_coding_gene_count": "4779", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-12-01", "dateModified": "2011-12-01", "datePublished": "2011-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Granulicella mallensis MP5ACTX8" ], "sample_taxid": [ "682795" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.767 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6237577", "Number of Sequences": "1", "Longest Sequences (bp)": "6237577", "N50 (bp)": "6237577", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.9", "Number of CDSs": "4902", "Average Protein Length": "365.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, 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"below_threshold" }, { "organism_name": "Acidipila rosea", "strain": "strain=DSM 103428", "accession": "GCA_004339725.1", "taxid": 768535, "species_taxid": 768535, "relation_to_type": "type", "validated": true, "ani": 76.9407, "matched_fragments": 147, "total_fragments": 2079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 76.6958, "matched_fragments": 144, "total_fragments": 2079, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000178955.2", "gtdb_species": "s__Granulicella_A mallensis", "ani": 100.0, "matched_fragments": 2079, "total_fragments": 2079, "gtdb_taxonomy": 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