{
    "type": "genome",
    "identifier": "GCF_000183405.1",
    "organism": "Calditerrivibrio nitroreducens DSM 19672",
    "title": "Calditerrivibrio nitroreducens DSM 19672",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000183405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00102793",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "768670",
        "species_taxid": "477976",
        "organism_name": "Calditerrivibrio nitroreducens DSM 19672",
        "infraspecific_name": "strain=DSM 19672",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2010/11/30",
        "asm_name": "ASM18340v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000183405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/183/405/GCF_000183405.1_ASM18340v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2216552",
        "genome_size_ungapped": "2216552",
        "gc_percent": "35.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000183405.1-RS_2024_05_26",
        "annotation_date": "2024-05-26",
        "total_gene_count": "2181",
        "protein_coding_gene_count": "2122",
        "non_coding_gene_count": "51",
        "pubmed_id": "21475587"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2010-11-30",
    "dateModified": "2010-11-30",
    "datePublished": "2010-11-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Calditerrivibrio nitroreducens DSM 19672"
        ],
        "sample_taxid": [
            "768670"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Nagano, Yumata"
        ],
        "sample_host_location_id": [],
        "data_size": "0.617 MB",
        "sample_ph_range": {
            "min": 7075.0,
            "max": 7075.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2216552",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2157835",
        "N50 (bp)": "2157835",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.6",
        "Number of CDSs": "2129",
        "Average Protein Length": "323.4",
        "Coding Ratio (%)": "93.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Calditerrivibrio nitroreducens",
                "strain": "strain=DSM 19672",
                "accession": "GCA_000183405.1",
                "taxid": 477976,
                "species_taxid": 477976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 738,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Deferribacter autotrophicus",
                "strain": "strain=SL50",
                "accession": "GCA_008362905.1",
                "taxid": 500465,
                "species_taxid": 500465,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4991,
                "matched_fragments": 53,
                "total_fragments": 738,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000183405.1",
                "gtdb_species": "s__Calditerrivibrio nitroreducens",
                "ani": 100.0,
                "matched_fragments": 738,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Calditerrivibrionaceae;g__Calditerrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002878065.1",
                "gtdb_species": "s__Calditerrivibrio nitroreducens_A",
                "ani": 90.5336,
                "matched_fragments": 415,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Calditerrivibrionaceae;g__Calditerrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008362905.1",
                "gtdb_species": "s__Deferribacter autotrophicus",
                "ani": 76.5577,
                "matched_fragments": 54,
                "total_fragments": 738,
                "gtdb_taxonomy": "d__Bacteria;p__Deferribacterota;c__Deferribacteres;o__Deferribacterales;f__Deferribacteraceae;g__Deferribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.146,
        "doubling_h": null,
        "growth_tmp": 55.0,
        "optimum_tmp": 55.0,
        "optimum_ph": 7.25,
        "genome_size": 2216551.6,
        "gc_content": 34.118,
        "coding_genes": 2094.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 40.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Calditerrivibrio",
        "nitroreducens",
        "DSM",
        "19672"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}