{ "type": "genome", "identifier": "GCF_000183545.2", "organism": "Thermaerobacter subterraneus DSM 13965", "title": "Thermaerobacter subterraneus DSM 13965", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000183545.2", "bioproject": "PRJNA224116", "biosample": "SAMN00116773", "wgs_master": "AENY00000000.2", "refseq_category": "reference genome", "taxid": "867903", "species_taxid": "175696", "organism_name": "Thermaerobacter subterraneus DSM 13965", "infraspecific_name": "strain=DSM 13965", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/11/05", "asm_name": "ASM18354v3", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000183545.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/183/545/GCF_000183545.2_ASM18354v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2888741", "genome_size_ungapped": "2888441", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000183545.2-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "2410", "protein_coding_gene_count": "2326", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-11-05", "dateModified": "2012-11-05", "datePublished": "2012-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermaerobacter subterraneus DSM 13965" ], "sample_taxid": [ "867903" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.773 MB", "sample_ph_range": { "min": 85.0, "max": 85.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2888741", "Number of Sequences": "2", "Longest Sequences (bp)": "2497984", "N50 (bp)": "2497984", "Gap Ratio (%)": "0.010420", "GCcontent (%)": "72.0", "Number of CDSs": "2432", "Average Protein Length": "336.7", "Coding Ratio (%)": "85.0", "Number of rRNAs": "5", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermaerobacter subterraneus", "strain": "strain=DSM 13965", "accession": "GCA_000183545.3", "taxid": 175696, "species_taxid": 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76.0497, "matched_fragments": 157, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geomonas paludis", "strain": "strain=Red736", "accession": "GCA_014193585.1", "taxid": 2740185, "species_taxid": 2740185, "relation_to_type": "type", "validated": true, "ani": 75.6384, "matched_fragments": 60, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 75.3559, "matched_fragments": 81, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 75.267, "matched_fragments": 72, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.1997, "matched_fragments": 75, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.1641, "matched_fragments": 83, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acrocarpospora corrugata", "strain": "strain=NBRC 13972", "accession": "GCA_009687845.1", "taxid": 35763, "species_taxid": 35763, "relation_to_type": "type", "validated": true, "ani": 75.1197, "matched_fragments": 137, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, "species_taxid": 319939, "relation_to_type": "suspected-type", "validated": true, "ani": 75.0601, "matched_fragments": 90, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 74.998, "matched_fragments": 187, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces orinoci", "strain": "strain=NRRL B-3379", "accession": "GCA_003121295.1", "taxid": 67339, "species_taxid": 67339, "relation_to_type": "type", "validated": true, "ani": 74.9508, "matched_fragments": 159, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"cell_length": 0.301, "doubling_h": 0.176, "growth_tmp": 65.0, "optimum_tmp": 70.0, "optimum_ph": 8.5, "genome_size": 2888741.0, "gc_content": 71.97, "coding_genes": 2288.0, "rRNA16S_genes": 2.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.5, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermaerobacter", "subterraneus", "DSM", "13965" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }