{ "type": "genome", "identifier": "GCF_000185365.1", "organism": "Enterococcus italicus DSM 15952", "title": "Enterococcus italicus DSM 15952", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000185365.1", "bioproject": "PRJNA224116", "biosample": "SAMN00215989", "wgs_master": "AEPV00000000.1", "refseq_category": "na", "taxid": "888064", "species_taxid": "246144", "organism_name": "Enterococcus italicus DSM 15952", "infraspecific_name": "strain=DSM 15952", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/01/14", "asm_name": "ASM18536v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000185365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/185/365/GCF_000185365.1_ASM18536v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2415788", "genome_size_ungapped": "2308337", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "157", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000185365.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "2329", "protein_coding_gene_count": "2163", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-01-14", "dateModified": "2011-01-14", "datePublished": "2011-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus italicus DSM 15952" ], "sample_taxid": [ "888064" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.658 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2415788", "Number of Sequences": "55", "Longest Sequences (bp)": "2244623", "N50 (bp)": "2244623", "Gap Ratio (%)": "4.447865", "GCcontent (%)": "39.2", "Number of CDSs": "2237", "Average Protein Length": "296.2", "Coding Ratio (%)": "82.3", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus italicus", "strain": "strain=DSM 15952", "accession": "GCA_000185365.1", "taxid": 246144, "species_taxid": 246144, "relation_to_type": "type", "validated": true, "ani": 99.9857, 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"organism_name": "Enterococcus asini", "strain": "strain=ATCC 700915", "accession": "GCA_000407365.1", "taxid": 57732, "species_taxid": 57732, "relation_to_type": "type", "validated": true, "ani": 78.3501, "matched_fragments": 85, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407025.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 78.2054, "matched_fragments": 166, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus sulfureus", "strain": "strain=ATCC 49903", "accession": "GCA_000407605.1", "taxid": 1356, "species_taxid": 1356, "relation_to_type": "type", "validated": true, "ani": 78.1367, "matched_fragments": 166, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", 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"validated": true, "ani": 76.9554, "matched_fragments": 62, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melissococcus plutonius", "strain": "strain=ATCC 35311", "accession": "GCA_000270185.1", "taxid": 33970, "species_taxid": 33970, "relation_to_type": "type", "validated": true, "ani": 76.9175, "matched_fragments": 67, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Carnobacterium divergens", "strain": "strain=DSM 20623", "accession": "GCA_001437085.1", "taxid": 2748, "species_taxid": 2748, "relation_to_type": "type", "validated": true, "ani": 76.7778, "matched_fragments": 62, "total_fragments": 787, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000185365.1", "gtdb_species": "s__Enterococcus_G italicus", "ani": 99.9857, "matched_fragments": 772, 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