{ "type": "genome", "identifier": "GCF_000186465.1", "organism": "Streptococcus australis ATCC 700641", "title": "Streptococcus australis ATCC 700641", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000186465.1", "bioproject": "PRJNA224116", "biosample": "SAMN00253300", "wgs_master": "AEQR00000000.1", "refseq_category": "na", "taxid": "888833", "species_taxid": "113107", "organism_name": "Streptococcus australis ATCC 700641", "infraspecific_name": "strain=ATCC 700641", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/01/26", "asm_name": "ASM18646v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000186465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/465/GCF_000186465.1_ASM18646v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2129953", "genome_size_ungapped": "2107884", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000186465.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2042", "protein_coding_gene_count": "1944", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-01-26", "dateModified": "2011-01-26", "datePublished": "2011-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus australis ATCC 700641" ], "sample_taxid": [ "888833" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.598 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2129953", "Number of Sequences": "6", "Longest Sequences (bp)": "2121533", "N50 (bp)": "2121533", "Gap Ratio (%)": "1.036126", "GCcontent (%)": "41.8", "Number of CDSs": "1994", "Average Protein Length": "309.8", "Coding Ratio (%)": "87.0", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000186465.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 99.9932, "matched_fragments": 703, "total_fragments": 708, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus australis", "strain": "strain=NCTC13166", "accession": "GCA_900476055.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 99.9488, "matched_fragments": 706, "total_fragments": 708, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000222745.2", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 99.9138, "matched_fragments": 676, "total_fragments": 708, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus xiaochunlingii", "strain": "strain=E24", "accession": "GCA_006385805.1", "taxid": 2589788, "species_taxid": 2589788, "relation_to_type": "type", "validated": true, "ani": 93.5555, "matched_fragments": 565, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ilei", "strain": "strain=I-G2", "accession": "GCA_000479335.1", "taxid": 1156431, "species_taxid": 1156431, "relation_to_type": "type", "validated": true, "ani": 92.7344, "matched_fragments": 575, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus koreensis", "strain": "strain=JS71", "accession": "GCA_003627135.1", "taxid": 2382163, "species_taxid": 2382163, "relation_to_type": "type", "validated": true, "ani": 92.4725, "matched_fragments": 588, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus rubneri", "strain": "strain=DSM 26920", "accession": "GCA_004785935.1", "taxid": 1234680, "species_taxid": 1234680, "relation_to_type": "type", "validated": true, "ani": 91.7467, "matched_fragments": 578, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3793, "matched_fragments": 437, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3403, "matched_fragments": 436, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 81.2512, "matched_fragments": 220, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0776, "matched_fragments": 110, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 78.5474, "matched_fragments": 78, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.4487, "matched_fragments": 101, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000186465.1", "gtdb_species": "s__Streptococcus australis", "ani": 99.9932, "matched_fragments": 703, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "95.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_902363395.1", "gtdb_species": "s__Streptococcus sp902363395", "ani": 93.6199, "matched_fragments": 579, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006385805.1", "gtdb_species": "s__Streptococcus xiaochunlingii", "ani": 93.56, "matched_fragments": 565, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.12", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_015553625.1", "gtdb_species": "s__Streptococcus australis_B", "ani": 93.541, "matched_fragments": 588, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.97", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004166885.1", 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92.4934, "matched_fragments": 587, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.43", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_004785935.1", "gtdb_species": "s__Streptococcus rubneri", "ani": 91.8128, "matched_fragments": 575, "total_fragments": 708, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000314795.2", "gtdb_species": "s__Streptococcus sp000314795", "ani": 87.7767, "matched_fragments": 464, 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