{ "type": "genome", "identifier": "GCF_000187585.1", "organism": "Streptococcus peroris ATCC 700780", "title": "Streptococcus peroris ATCC 700780", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000187585.1", "bioproject": "PRJNA224116", "biosample": "SAMN00253298", "wgs_master": "AEVF00000000.1", "refseq_category": "reference genome", "taxid": "888746", "species_taxid": "68891", "organism_name": "Streptococcus peroris ATCC 700780", "infraspecific_name": "strain=ATCC 700780", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/02/03", "asm_name": "ASM18758v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000187585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/187/585/GCF_000187585.1_ASM18758v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1639920", "genome_size_ungapped": "1633153", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000187585.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "1655", "protein_coding_gene_count": "1593", "non_coding_gene_count": "35", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-02-03", "dateModified": "2011-02-03", "datePublished": "2011-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus peroris ATCC 700780" ], "sample_taxid": [ "888746" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.463 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1639920", "Number of Sequences": "3", "Longest Sequences (bp)": "1633971", "N50 (bp)": "1633971", "Gap Ratio (%)": "0.412642", "GCcontent (%)": "39.1", "Number of CDSs": "1605", "Average Protein Length": "303.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "2", "Number of tRNAs": "28", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 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"type", "validated": true, "ani": 85.854, "matched_fragments": 431, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 83.0985, "matched_fragments": 359, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 82.8649, "matched_fragments": 355, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 82.8468, "matched_fragments": 368, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 82.7482, "matched_fragments": 336, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 82.7243, "matched_fragments": 344, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 82.721, "matched_fragments": 345, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halitosis", "strain": "strain=VT-4", "accession": "GCA_003143695.2", "taxid": 2172545, "species_taxid": 2172545, "relation_to_type": "type", "validated": true, "ani": 82.6432, "matched_fragments": 355, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 82.567, "matched_fragments": 345, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8991, "matched_fragments": 114, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 78.5303, "matched_fragments": 67, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000187585.1", "gtdb_species": "s__Streptococcus peroris", "ani": 99.9972, "matched_fragments": 543, "total_fragments": 545, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000215385.1", "gtdb_species": "s__Streptococcus infantis_B", "ani": 89.137, "matched_fragments": 455, "total_fragments": 545, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000279535.1", "gtdb_species": "s__Streptococcus infantis_I", "ani": 89.0032, "matched_fragments": 469, "total_fragments": 545, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.10", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001074155.1", "gtdb_species": "s__Streptococcus pseudopneumoniae_A", "ani": 88.9755, "matched_fragments": 456, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "peroris", "ATCC", "700780" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }