{ "type": "genome", "identifier": "GCF_000187995.2", "organism": "Streptococcus macacae NCTC 11558", "title": "Streptococcus macacae NCTC 11558", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JCVI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000187995.2", "bioproject": "PRJNA224116", "biosample": "SAMN02436328", "wgs_master": "AEUW00000000.2", "refseq_category": "na", "taxid": "764298", "species_taxid": "1339", "organism_name": "Streptococcus macacae NCTC 11558", "infraspecific_name": "strain=NCTC 11558", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/11/18", "asm_name": "ASM18799v3", "asm_submitter": "JCVI", "gbrs_paired_asm": "GCA_000187995.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/187/995/GCF_000187995.2_ASM18799v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1916985", "genome_size_ungapped": "1916985", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-24", "total_gene_count": "1894", "protein_coding_gene_count": "1769", "non_coding_gene_count": "84", "pubmed_id": "24625962" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-11-18", "dateModified": "2011-11-18", "datePublished": "2011-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus macacae NCTC 11558" ], "sample_taxid": [ "764298" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.538 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1916985", "Number of Sequences": "1", "Longest Sequences (bp)": "1916985", "N50 (bp)": "1916985", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.8", "Number of CDSs": "1808", "Average Protein Length": "301.8", "Coding Ratio (%)": "85.4", "Number of rRNAs": "15", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus macacae", "strain": "strain=NCTC 11558", "accession": "GCA_000187995.3", "taxid": 1339, "species_taxid": 1339, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 637, "total_fragments": 638, 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"strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.2171, "matched_fragments": 57, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=NCTC 8618", "accession": "GCA_000785515.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0416, "matched_fragments": 84, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1158", "accession": "GCA_016725165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 78.9034, "matched_fragments": 86, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "macacae", "NCTC", "11558" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }