{ "type": "genome", "identifier": "GCF_000188055.2", "organism": "Streptococcus urinalis 2285-97", "title": "Streptococcus urinalis 2285-97", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JCVI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000188055.2", "bioproject": "PRJNA224116", "biosample": "SAMN02436559", "wgs_master": "AEUZ00000000.2", "refseq_category": "na", "taxid": "764291", "species_taxid": "149016", "organism_name": "Streptococcus urinalis 2285-97", "infraspecific_name": "strain=2285-97", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/11/18", "asm_name": "ASM18805v3", "asm_submitter": "JCVI", "gbrs_paired_asm": "GCA_000188055.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/055/GCF_000188055.2_ASM18805v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2130431", "genome_size_ungapped": "2130431", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-11-29", "total_gene_count": "2229", "protein_coding_gene_count": "2021", "non_coding_gene_count": "80", "pubmed_id": "24625962" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-11-18", "dateModified": "2011-11-18", "datePublished": "2011-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus urinalis 2285-97" ], "sample_taxid": [ "764291" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2130431", "Number of Sequences": "1", "Longest Sequences (bp)": "2130431", "N50 (bp)": "2130431", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "2207", "Average Protein Length": "287.1", "Coding Ratio (%)": "89.2", "Number of rRNAs": "14", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus urinalis", "strain": "strain=2285-97", "accession": "GCA_000188055.3", "taxid": 149016, "species_taxid": 149016, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 709, "total_fragments": 710, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus urinalis", "strain": "strain=NCTC13766", "accession": "GCA_900636885.1", "taxid": 149016, "species_taxid": 149016, "relation_to_type": "type", "validated": true, "ani": 99.9912, "matched_fragments": 708, "total_fragments": 710, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 82.3054, "matched_fragments": 157, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus dysgalactiae", "strain": "strain=FDAARGOS_1157", "accession": "GCA_016724885.1", "taxid": 1334, "species_taxid": 1334, "relation_to_type": "type", "validated": true, "ani": 81.5687, "matched_fragments": 152, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus 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"accession": "GCA_000187935.2", "taxid": 1348, "species_taxid": 1348, "relation_to_type": "type", "validated": true, "ani": 79.3798, "matched_fragments": 171, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus troglodytae", "strain": "strain=TKU 31", "accession": "GCA_002355215.1", "taxid": 1111760, "species_taxid": 1111760, "relation_to_type": "type", "validated": true, "ani": 79.2664, "matched_fragments": 106, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.2194, "matched_fragments": 139, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=NCTC10713", "accession": "GCA_900636475.1", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 78.9088, "matched_fragments": 88, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus penaeicida", "strain": "strain=CAIM 1838", "accession": "GCA_002887775.1", "taxid": 1765960, "species_taxid": 1765960, "relation_to_type": "type", "validated": true, "ani": 78.696, "matched_fragments": 168, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 78.5849, "matched_fragments": 119, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=NCTC10449", "accession": "GCA_900475095.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 78.49, "matched_fragments": 121, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus bovimastitidis", "strain": "strain=NZ1587", "accession": "GCA_001885095.1", "taxid": 1856638, "species_taxid": 1856638, "relation_to_type": "type", "validated": true, "ani": 78.486, "matched_fragments": 165, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 78.3316, "matched_fragments": 104, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus marimammalium", "strain": "strain=DSM 18627", "accession": "GCA_000380045.1", "taxid": 269666, "species_taxid": 269666, "relation_to_type": "type", "validated": true, "ani": 77.9831, "matched_fragments": 96, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus zalophi", "strain": "strain=CSL7508", "accession": "GCA_016481285.1", "taxid": 640031, "species_taxid": 640031, "relation_to_type": "type", "validated": true, "ani": 77.6792, "matched_fragments": 113, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": "GCA_000375505.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 77.5925, "matched_fragments": 116, "total_fragments": 710, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000188055.2", "gtdb_species": "s__Streptococcus urinalis", "ani": 100.0, "matched_fragments": 710, "total_fragments": 710, "gtdb_taxonomy": 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