{ "type": "genome", "identifier": "GCF_000189255.1", "organism": "Vibrio brasiliensis LMG 20546", "title": "Vibrio brasiliensis LMG 20546", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000189255.1", "bioproject": "PRJNA224116", "biosample": "SAMN02952918", "wgs_master": "AEVS00000000.1", "refseq_category": "reference genome", "taxid": "945543", "species_taxid": "170652", "organism_name": "Vibrio brasiliensis LMG 20546", "infraspecific_name": "strain=LMG 20546", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/02/11", "asm_name": "ASM18925v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_000189255.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/189/255/GCF_000189255.1_ASM18925v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4715026", "genome_size_ungapped": "4715026", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "116", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000189255.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4345", "protein_coding_gene_count": "4239", "non_coding_gene_count": "63", "pubmed_id": "21930677" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-02-11", "dateModified": "2011-02-11", "datePublished": "2011-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio brasiliensis LMG 20546" ], "sample_taxid": [ "945543" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000189255.1", "gtdb_species": "s__Vibrio brasiliensis", "ani": 100.0, "matched_fragments": 1512, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006124995.1", "gtdb_species": "s__Vibrio sp006124995", "ani": 85.2406, "matched_fragments": 964, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004551525.1", "gtdb_species": "s__Vibrio ouci", "ani": 82.3429, "matched_fragments": 769, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000772105.1", "gtdb_species": "s__Vibrio tubiashii", "ani": 82.217, "matched_fragments": 805, "total_fragments": 1519, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.96", "min_intra_species_af": 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