{
    "type": "genome",
    "identifier": "GCF_000190315.1",
    "organism": "Vulcanisaeta moutnovskia 768-28",
    "title": "Vulcanisaeta moutnovskia 768-28",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Centre Bioengineering RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000190315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02603092",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "985053",
        "species_taxid": "985052",
        "organism_name": "Vulcanisaeta moutnovskia 768-28",
        "infraspecific_name": "strain=768-28",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/02/22",
        "asm_name": "ASM19031v1",
        "asm_submitter": "Centre Bioengineering RAS",
        "gbrs_paired_asm": "GCA_000190315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/190/315/GCF_000190315.1_ASM19031v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2298983",
        "genome_size_ungapped": "2298983",
        "gc_percent": "42.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000190315.1-RS_2024_09_05",
        "annotation_date": "2024-09-05",
        "total_gene_count": "2532",
        "protein_coding_gene_count": "2469",
        "non_coding_gene_count": "49",
        "pubmed_id": "21398550"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-02-22",
    "dateModified": "2011-02-22",
    "datePublished": "2011-02-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Vulcanisaeta moutnovskia 768-28"
        ],
        "sample_taxid": [
            "985053"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.652 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2298983",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2298983",
        "N50 (bp)": "2298983",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.4",
        "Number of CDSs": "2465",
        "Average Protein Length": "280.3",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vulcanisaeta moutnovskia",
                "strain": "strain=768-28",
                "accession": "GCA_000190315.1",
                "taxid": 985052,
                "species_taxid": 985052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 766,
                "total_fragments": 766,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Vulcanisaeta distributa",
                "strain": "strain=DSM 14429",
                "accession": "GCA_000148385.1",
                "taxid": 164451,
                "species_taxid": 164451,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.6051,
                "matched_fragments": 506,
                "total_fragments": 766,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcanisaeta souniana",
                "strain": "strain=JCM 11219",
                "accession": "GCA_014646555.1",
                "taxid": 164452,
                "species_taxid": 164452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2516,
                "matched_fragments": 458,
                "total_fragments": 766,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcanisaeta souniana",
                "strain": "strain=JCM 11219",
                "accession": "GCA_001316025.1",
                "taxid": 164452,
                "species_taxid": 164452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1269,
                "matched_fragments": 422,
                "total_fragments": 766,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcanisaeta thermophila",
                "strain": "strain=CBA1501",
                "accession": "GCA_001748385.1",
                "taxid": 867917,
                "species_taxid": 867917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9396,
                "matched_fragments": 129,
                "total_fragments": 766,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000190315.1",
                "gtdb_species": "s__Vulcanisaeta moutnovskia",
                "ani": 100.0,
                "matched_fragments": 766,
                "total_fragments": 766,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermocladiaceae;g__Vulcanisaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001315985.1",
                "gtdb_species": "s__Vulcanisaeta distributa_E",
                "ani": 80.8984,
                "matched_fragments": 490,
                "total_fragments": 766,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermocladiaceae;g__Vulcanisaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000148385.1",
                "gtdb_species": "s__Vulcanisaeta distributa",
                "ani": 80.6207,
                "matched_fragments": 504,
                "total_fragments": 766,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermocladiaceae;g__Vulcanisaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.46",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014646555.1",
                "gtdb_species": "s__Vulcanisaeta souniana",
                "ani": 80.2516,
                "matched_fragments": 458,
                "total_fragments": 766,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermocladiaceae;g__Vulcanisaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001316245.1",
                "gtdb_species": "s__Vulcanisaeta sp001316245",
                "ani": 79.5797,
                "matched_fragments": 434,
                "total_fragments": 766,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Thermoproteales;f__Thermocladiaceae;g__Vulcanisaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.706,
        "growth_tmp": 87.5,
        "optimum_tmp": 88.333,
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        "genome_size": 2391316.778,
        "gc_content": 45.4,
        "coding_genes": 2444.333,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 43.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Vulcanisaeta",
        "moutnovskia",
        "768-28"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}