{ "type": "genome", "identifier": "GCF_000190575.1", "organism": "Phocaeicola salanitronis DSM 18170", "title": "Phocaeicola salanitronis DSM 18170", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000190575.1", "bioproject": "PRJNA224116", "biosample": "SAMN00713589", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "667015", "species_taxid": "376805", "organism_name": "Phocaeicola salanitronis DSM 18170", "infraspecific_name": "strain=DSM 18170", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/02/28", "asm_name": "ASM19057v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000190575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/190/575/GCF_000190575.1_ASM19057v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4308663", "genome_size_ungapped": "4308663", "gc_percent": "46.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000190575.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3775", "protein_coding_gene_count": "3600", "non_coding_gene_count": "102", "pubmed_id": "21677856" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-02-28", "dateModified": "2011-02-28", "datePublished": "2011-02-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Phocaeicola salanitronis DSM 18170" ], "sample_taxid": [ "667015" ], "sample_host_organism": [ "chicken" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.218 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4308663", "Number of Sequences": "4", "Longest Sequences (bp)": "4242803", "N50 (bp)": "4242803", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "3615", "Average Protein Length": "343.6", "Coding Ratio (%)": "86.5", "Number of rRNAs": "18", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phocaeicola salanitronis", "strain": "strain=DSM 18170", "accession": "GCA_000190575.1", "taxid": 376805, 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