{ "type": "genome", "identifier": "GCF_000190595.1", "organism": "Cellulophaga lytica DSM 7489", "title": "Cellulophaga lytica DSM 7489", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000190595.1", "bioproject": "PRJNA224116", "biosample": "SAMN00713590", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "867900", "species_taxid": "979", "organism_name": "Cellulophaga lytica DSM 7489", "infraspecific_name": "strain=DSM 7489", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/02/28", "asm_name": "ASM19059v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000190595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/190/595/GCF_000190595.1_ASM19059v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3765936", "genome_size_ungapped": "3765936", "gc_percent": "32.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000190595.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3343", "protein_coding_gene_count": "3277", "non_coding_gene_count": "56", "pubmed_id": "21677859" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-02-28", "dateModified": "2011-02-28", "datePublished": "2011-02-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulophaga lytica DSM 7489" ], "sample_taxid": [ "867900" ], "sample_host_organism": [], 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{ "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 77.1322, "matched_fragments": 219, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 77.1254, "matched_fragments": 201, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter ulvicola", "strain": "strain=DSM 15366", "accession": "GCA_900155985.1", "taxid": 228959, "species_taxid": 228959, "relation_to_type": "type", "validated": true, "ani": 77.0985, "matched_fragments": 231, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": 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1836467, "species_taxid": 1836467, "relation_to_type": "type", "validated": true, "ani": 76.9539, "matched_fragments": 222, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.8398, "matched_fragments": 175, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Joostella atrarenae", "strain": "strain=M1-2", "accession": "GCA_021764745.1", "taxid": 679257, "species_taxid": 679257, "relation_to_type": "type", "validated": true, "ani": 76.6273, "matched_fragments": 184, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000190595.1", "gtdb_species": "s__Cellulophaga 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