{ "type": "genome", "identifier": "GCF_000191065.1", "organism": "Prevotella multiformis DSM 16608", "title": "Prevotella multiformis DSM 16608", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000191065.1", "bioproject": "PRJNA224116", "biosample": "SAMN00253307", "wgs_master": "AEWX00000000.1", "refseq_category": "na", "taxid": "888743", "species_taxid": "282402", "organism_name": "Prevotella multiformis DSM 16608", "infraspecific_name": "strain=DSM 16608", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/03/04", "asm_name": "ASM19106v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000191065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/191/065/GCF_000191065.1_ASM19106v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3057407", "genome_size_ungapped": "3034240", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000191065.1-RS_2024_08_21", "annotation_date": "2024-08-21", "total_gene_count": "2453", "protein_coding_gene_count": "2337", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-03-04", "dateModified": "2011-03-04", "datePublished": "2011-03-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella multiformis DSM 16608" ], "sample_taxid": [ "888743" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3057407", "Number of Sequences": "25", "Longest Sequences (bp)": "1620261", "N50 (bp)": "1620261", "Gap Ratio (%)": "0.757734", "GCcontent (%)": "51.6", "Number of CDSs": "2347", "Average Protein Length": "348.1", "Coding Ratio (%)": "80.2", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 99.9962, "matched_fragments": 1007, "total_fragments": 1010, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 89.4736, "matched_fragments": 725, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 89.3496, "matched_fragments": 744, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.9366, "matched_fragments": 488, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 80.9273, "matched_fragments": 488, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 79.0179, "matched_fragments": 108, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 78.9385, "matched_fragments": 92, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleniella intestinalis", "strain": "strain=PINT", "accession": "GCA_013166595.1", "taxid": 2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 78.9155, "matched_fragments": 66, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.8393, "matched_fragments": 117, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000191065.1", "gtdb_species": "s__Prevotella multiformis", "ani": 99.9962, "matched_fragments": 1007, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900454835.1", "gtdb_species": "s__Prevotella denticola", "ani": 89.3394, "matched_fragments": 744, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella fusca", "ani": 80.8318, "matched_fragments": 496, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018128065.1", "gtdb_species": "s__Prevotella sp000467895", "ani": 80.5092, "matched_fragments": 342, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000257925.1", "gtdb_species": "s__Prevotella sp000257925", "ani": 80.2561, "matched_fragments": 202, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000144405.1", "gtdb_species": "s__Prevotella melaninogenica", "ani": 79.865, "matched_fragments": 290, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.46", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 36, "status": "-" }, { "accession": "GCF_018127965.1", "gtdb_species": "s__Prevotella melaninogenica_B", "ani": 79.785, "matched_fragments": 308, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.77", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.91", 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "multiformis", "DSM", "16608" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }