{ "type": "genome", "identifier": "GCF_000191885.1", "organism": "Anaerophaga thermohalophila DSM 12881", "title": "Anaerophaga thermohalophila DSM 12881", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bergen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000191885.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471583", "wgs_master": "AEWI00000000.1", "refseq_category": "reference genome", "taxid": "886379", "species_taxid": "177400", "organism_name": "Anaerophaga thermohalophila DSM 12881", "infraspecific_name": "strain=DSM 12881", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/03/08", "asm_name": "ASM19188v1", "asm_submitter": "University of Bergen", "gbrs_paired_asm": "GCA_000191885.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/191/885/GCF_000191885.1_ASM19188v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4324239", "genome_size_ungapped": "4324239", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "211", "contig_count": "211", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000191885.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3372", "protein_coding_gene_count": "3277", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-03-08", "dateModified": "2011-03-08", "datePublished": "2011-03-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerophaga thermohalophila DSM 12881" ], "sample_taxid": [ "886379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.227 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4324239", "Number of Sequences": "211", "Longest Sequences (bp)": "249284", "N50 (bp)": "52550", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "3206", "Average Protein Length": "359.6", "Coding Ratio (%)": "80.0", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "13" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerophaga thermohalophila", "strain": "strain=DSM 12881", "accession": "GCA_000191885.2", "taxid": 177400, "species_taxid": 177400, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1318, "total_fragments": 1353, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinilabilia rubra", "strain": "strain=WTE16", "accession": "GCA_003121985.1", "taxid": 2162893, "species_taxid": 2162893, "relation_to_type": "type", "validated": true, "ani": 77.5262, "matched_fragments": 234, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinilabilia salmonicolor", "strain": "strain=JCM 21150", "accession": "GCA_000259075.1", "taxid": 989, "species_taxid": 989, "relation_to_type": "type", "validated": true, "ani": 77.1527, "matched_fragments": 279, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinilabilia salmonicolor", "strain": "strain=JCM 21150", "accession": "GCA_000614895.1", "taxid": 989, "species_taxid": 989, "relation_to_type": "type", "validated": true, "ani": 77.1364, "matched_fragments": 271, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophagus xiamenensis", "strain": "strain=DSM 19012", "accession": "GCA_900112795.1", "taxid": 385682, "species_taxid": 385682, "relation_to_type": "type", "validated": true, "ani": 76.9193, "matched_fragments": 228, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophagus xiamenensis", "strain": "strain=HS1", "accession": "GCA_000220155.2", "taxid": 385682, "species_taxid": 385682, "relation_to_type": "type", "validated": true, "ani": 76.8475, "matched_fragments": 217, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000191885.1", "gtdb_species": "s__Anaerophaga thermohalophila", "ani": 100.0, "matched_fragments": 1320, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Anaerophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000250735.1", "gtdb_species": "s__Anaerophaga thermohalophila_A", "ani": 90.2674, "matched_fragments": 950, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Anaerophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003003035.1", "gtdb_species": "s__Marinilabilia salmonicolor_A", "ani": 77.63, "matched_fragments": 257, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003121985.1", "gtdb_species": "s__Marinilabilia rubra", "ani": 77.5854, "matched_fragments": 232, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002411085.1", "gtdb_species": "s__Marinilabilia sp002411085", "ani": 77.5492, "matched_fragments": 203, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016278715.1", "gtdb_species": "s__Marinilabilia sp016278715", "ani": 77.3722, "matched_fragments": 244, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112795.1", "gtdb_species": "s__Thermophagus xiamenensis", "ani": 76.927, "matched_fragments": 230, "total_fragments": 1353, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Thermophagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.477, "doubling_h": null, "growth_tmp": 50.0, "optimum_tmp": 50.0, "optimum_ph": null, "genome_size": 4433722.0, "gc_content": 41.3, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Anaerophaga", "thermohalophila", "DSM", "12881" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }