# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_4	LOCUS_00040	sequence1:2763..3146(-)	frameshift,internal_stop_codon	3173..3175(-)	3337	WP_000023851.1	HAMP domain-containing sensor histidine kinase	84.3	22.3	37.0
MGA_18	LOCUS_00180	sequence1:18000..18290(+)	frameshift		18281	WP_005902123.1	crossover junction endodeoxyribonuclease RuvC	97.9	49.5	53.2
MGA_51	LOCUS_00510	sequence1:47561..48211(+)	partial			WP_011860641.1	ComF family protein	88.4	71.2	32.3
MGA_58	LOCUS_00580	sequence1:56823..57140(+)	frameshift		57104	WP_003357393.1	cell division ATP-binding protein FtsE	86.7	39.9	60.4
MGA_59	LOCUS_00590	sequence1:57185..57508(+)	frameshift		57104	WP_010963819.1	cell division ATP-binding protein FtsE	97.2	45.6	61.5
MGA_76	LOCUS_00760	sequence1:71847..72371(-)	frameshift,internal_stop_codon	72437..72439(-)	72439	WP_012583294.1	S-methyl-5-thioribose-1-phosphate isomerase	93.7	47.4	54.6
MGA_77	LOCUS_00770	sequence1:72428..72871(-)	frameshift,internal_stop_codon	72437..72439(-)	72439	WP_012583294.1	S-methyl-5-thioribose-1-phosphate isomerase	95.9	41.0	42.5
MGA_93	LOCUS_00930	sequence1:89331..90062(-)	frameshift		90079	WP_012546162.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	95.5	59.2	47.2
MGA_94	LOCUS_00940	sequence1:90071..90511(-)	frameshift		90082	WP_012583828.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	95.9	59.7	31.4
MGA_99	LOCUS_00990	sequence1:96031..96465(-)	partial			WP_003225724.1	transcriptional regulator CtsR	67.4	58.4	39.2
MGA_102	LOCUS_01020	sequence1:98013..98546(-)	partial			WP_011963555.1	competence/damage-inducible protein A	87.0	35.9	46.1
MGA_113	LOCUS_01130	sequence1:111745..113736(-)	partial			WP_011861665.1	single-stranded-DNA-specific exonuclease RecJ	92.0	73.7	38.6
MGA_135	LOCUS_01350	sequence1:133522..134160(-)	frameshift		134171	WP_003243077.1	alkyl hydroperoxide reductase subunit F	98.1	41.1	41.1
MGA_136	LOCUS_01360	sequence1:134142..134435(-)	frameshift		134165	WP_010905291.1	alkyl hydroperoxide reductase subunit F	91.8	17.5	39.3
MGA_138	LOCUS_01380	sequence1:137105..138211(-)	partial			WP_012868996.1	glycosyl hydrolase family 18 protein	82.6	63.0	34.2
MGA_153	LOCUS_01530	sequence1:153349..153975(+)	partial			WP_012257549.1	response regulator	89.9	37.9	35.8
MGA_154	LOCUS_01540	sequence1:154102..157086(-)	partial			WP_048065380.1	AAA family ATPase	43.0	32.0	24.7
MGA_166	LOCUS_01660	sequence1:165275..165997(-)	partial			WP_012583133.1	NfeD family protein	83.8	48.5	25.7
MGA_178	LOCUS_01780	sequence1:176705..177571(-)	partial			WP_003419057.1	septum site-determining protein MinD	59.7	66.4	34.7
MGA_186	LOCUS_01860	sequence1:184772..185602(-)	frameshift		185591	WP_000414849.1	aspartate-semialdehyde dehydrogenase	99.6	79.3	55.4
MGA_187	LOCUS_01870	sequence1:185571..185807(-)	frameshift		185591	WP_011460383.1	aspartate-semialdehyde dehydrogenase	87.2	20.7	50.0
MGA_204	LOCUS_02040	sequence1:198663..199475(-)	partial			WP_011021751.1	ABC transporter ATP-binding protein	84.8	37.3	39.3
MGA_209	LOCUS_02090	sequence1:205027..205557(-)	partial			WP_011392073.1	DNA repair protein RadC	67.6	50.7	32.8
MGA_212	LOCUS_02120	sequence1:208428..209333(-)	frameshift		208433	WP_016728782.1	CCA tRNA nucleotidyltransferase	92.0	56.6	37.9
MGA_219	LOCUS_02190	sequence1:214179..215552(-)	frameshift		215691	WP_003436264.1	excinuclease ABC subunit UvrC	97.2	73.2	39.5
MGA_220	LOCUS_02200	sequence1:215467..216033(-)	frameshift		215694	WP_003436264.1	excinuclease ABC subunit UvrC	56.4	17.5	60.4
MGA_231	LOCUS_02310	sequence1:229275..230852(-)	frameshift		230838	WP_003357766.1	DNA primase	84.0	72.7	37.7
MGA_232	LOCUS_02320	sequence1:230833..231066(-)	frameshift		230850	WP_011392160.1	DNA primase	93.5	11.9	52.8
MGA_268	LOCUS_02670	sequence1:276578..277414(-)	partial			WP_011392700.1	Asp23/Gls24 family envelope stress response protein	72.7	73.6	45.1
MGA_285	LOCUS_02840	sequence1:293667..295058(-)	partial			WP_005056342.1	sensor histidine kinase	46.7	43.5	37.9
MGA_292	LOCUS_02910	sequence1:299348..299806(-)	frameshift		299897	WP_003234080.1	thiamine-phosphate kinase	92.1	43.4	44.1
MGA_293	LOCUS_02920	sequence1:299796..300347(-)	frameshift		299903	WP_011392671.1	thiamine-phosphate kinase	84.7	46.0	37.4
MGA_301	LOCUS_02990	sequence1:305756..306706(-)	partial			WP_048065885.1	signal peptide peptidase SppA	82.0	61.9	40.5
MGA_307	LOCUS_03050	sequence1:312161..313066(-)	frameshift		313125	WP_203473432.1	type I DNA topoisomerase	92.4	36.8	47.0
MGA_308	LOCUS_03060	sequence1:313099..314478(-)	frameshift		313122	WP_012047858.1	type I DNA topoisomerase	90.2	59.6	54.7
MGA_336	LOCUS_03340	sequence1:342315..344873(-)	partial			WP_011460393.1	translation initiation factor IF-2	73.6	64.6	55.3
MGA_355	LOCUS_03530	sequence1:359260..359802(-)	frameshift		359816	WP_156274057.1	orotidine-5'-phosphate decarboxylase	99.4	74.1	49.4
MGA_356	LOCUS_03540	sequence1:359793..359990(-)	frameshift		359807	WP_012545803.1	orotidine-5'-phosphate decarboxylase	84.6	23.7	43.6
MGA_357	LOCUS_03550	sequence1:360087..361019(-)	partial			WP_011948865.1	hypothetical protein	84.8	74.3	26.4
MGA_360	LOCUS_03580	sequence1:363160..364254(+)	partial			WP_015944155.1	N-acetylmuramoyl-L-alanine amidase	56.0	23.8	38.5
MGA_367	LOCUS_03650	sequence1:373601..375784(-)	partial			WP_011964423.1	ComEC/Rec2 family competence protein	57.8	61.0	25.6
MGA_392	LOCUS_03890	sequence1:396943..398610(+)	partial			WP_011143571.1	glycosyltransferase family 39 protein	59.1	59.0	26.7
MGA_428	LOCUS_04250	sequence1:433610..434587(-)	partial			WP_002858051.1	lipid A biosynthesis lauroyl acyltransferase HtrB	73.5	77.6	25.3
MGA_503	LOCUS_04990	sequence1:509359..509880(-)	frameshift,internal_stop_codon	509347..509349(-),509359..509361(-),509272..509274(-)	509232	WP_002303623.1	iron-containing alcohol dehydrogenase family protein	97.7	46.0	49.7
MGA_504	LOCUS_05000	sequence1:509927..510454(-)	internal_stop_codon	510491..510493(-)		WP_002244055.1	bile acid:sodium symporter family protein	83.4	44.8	46.6
MGA_505	LOCUS_05010	sequence1:510491..510946(-)	internal_stop_codon	510491..510493(-)		WP_014207989.1	bile acid:sodium symporter family protein	98.7	45.8	39.6
MGA_518	LOCUS_05130	sequence1:522334..523062(-)	partial			WP_010963888.1	class I SAM-dependent methyltransferase	66.5	77.5	32.1
MGA_520	LOCUS_05150	sequence1:523933..524550(-)	partial			WP_003723184.1	septum site-determining protein DivIVA	69.8	81.7	34.3
MGA_524	LOCUS_05190	sequence1:526554..527012(-)	partial			WP_003244791.1	cell division protein SepF	69.1	70.2	38.7
MGA_546	LOCUS_05410	sequence1:545344..546903(+)	partial			WP_011143571.1	glycosyltransferase family 39 protein	58.8	54.9	29.5
MGA_548	LOCUS_05430	sequence1:550085..550564(-)	partial			WP_041272441.1	FMN-binding protein	82.4	72.5	31.7
MGA_569	LOCUS_05640	sequence1:571307..573373(-)	partial			WP_011393212.1	PBP1A family penicillin-binding protein	89.2	69.9	41.0
MGA_576	LOCUS_05710	sequence1:579960..580184(-)	partial			WP_015945544.1	ribonuclease P protein component	95.9	64.0	43.7
MGA_588	LOCUS_05830	sequence1:595036..595257(-)	frameshift		595062	WP_000401853.1	helicase-related protein	78.1	5.3	54.4
MGA_597	LOCUS_05920	sequence1:603383..603976(-)	partial			WP_002263281.1	TetR/AcrR family transcriptional regulator	39.6	42.0	37.0
MGA_602	LOCUS_05970	sequence1:608117..610156(-)	partial			WP_000766176.1	AAA family ATPase	54.1	61.7	36.9
MGA_625	LOCUS_06200	sequence1:638068..643152(-)	partial			WP_133116924.1	YadA-like family protein	54.6	63.2	24.8
MGA_626	LOCUS_06210	sequence1:644470..647232(-)	partial			WP_100296084.1	YadA-like family protein	56.5	55.0	47.1
MGA_628	LOCUS_06230	sequence1:649179..650546(-)	partial			WP_010968591.1	YadA-like family protein	25.5	8.8	39.7
MGA_629	LOCUS_06240	sequence1:650543..654070(-)	partial			WP_011035898.1	ESPR-type extended signal peptide-containing protein	62.0	29.3	26.5
MGA_630	LOCUS_06250	sequence1:654083..656254(-)	partial			WP_011035898.1	ESPR-type extended signal peptide-containing protein	80.2	24.5	25.1
MGA_631	LOCUS_06260	sequence1:656997..657845(+)	partial			WP_035214669.1	efflux RND transporter periplasmic adaptor subunit	84.0	59.9	26.2
MGA_639	LOCUS_06330	sequence1:666856..667500(-)	partial			WP_012048276.1	M18 family aminopeptidase	79.4	40.5	46.3
MGA_648	LOCUS_06420	sequence1:685608..686750(-)	frameshift		686754	WP_010951099.1	DNA methyltransferase	99.5	52.2	34.5
MGA_649	LOCUS_06430	sequence1:686737..687120(-)	frameshift		687094	WP_010869119.1	site-specific DNA-methyltransferase	91.3	18.4	70.7
MGA_650	LOCUS_06440	sequence1:687080..687577(-)	frameshift		687085	WP_201781412.1	site-specific DNA-methyltransferase	87.9	22.9	38.3
MGA_657	LOCUS_06510	sequence1:692200..692823(-)	partial			WP_159427854.1	DUF2232 domain-containing protein	59.9	38.0	29.0
MGA_658	LOCUS_06520	sequence1:692846..693103(-)	partial			WP_040804636.1	GIY-YIG nuclease family protein	89.4	22.9	53.9
MGA_665	LOCUS_06590	sequence1:701101..701829(-)	frameshift		701832,701789	WP_004454768.1	phosphatidylglycerol lysyltransferase domain-containing protein	87.6	73.8	42.3
MGA_676	LOCUS_06700	sequence1:715627..716661(+)	partial			WP_011201897.1	glycosyltransferase family 2 protein	58.7	57.0	41.9
MGA_698	LOCUS_06920	sequence1:739901..741034(-)	partial			WP_012546013.1	type IV-A pilus assembly ATPase PilB	97.3	66.0	40.3
MGA_700	LOCUS_06940	sequence1:741823..742716(-)	partial			WP_012582467.1	peptidoglycan DD-metalloendopeptidase family protein	78.1	71.5	34.0
MGA_736	LOCUS_07270	sequence1:781709..781957(+)	internal_stop_codon	781955..781957(+)		WP_002355453.1	tyrosine-tyramine antiporter	100.0	17.4	65.9
MGA_737	LOCUS_07280	sequence1:781991..783121(+)	internal_stop_codon	781955..781957(+)		WP_002355453.1	tyrosine-tyramine antiporter	98.7	78.6	58.2
MGA_749	LOCUS_07400	sequence1:798885..799193(+)	partial			WP_004081489.1	S-layer homology domain-containing protein	49.0	12.5	52.0
MGA_751	LOCUS_07420	sequence1:800487..801953(+)	partial			WP_004082244.1	S-layer homology domain-containing protein	33.8	39.5	29.1
MGA_752	LOCUS_07430	sequence1:802260..803603(+)	partial			WP_004081489.1	S-layer homology domain-containing protein	60.0	58.8	25.9
MGA_769	LOCUS_07600	sequence1:815812..817464(-)	partial			WP_012870016.1	S-layer homology domain-containing protein	24.2	28.0	40.6
MGA_770	LOCUS_07610	sequence1:818091..818594(-)	partial			WP_012256687.1	energy coupling factor transporter S component ThiW	88.0	20.6	40.5
MGA_806	LOCUS_07970	sequence1:854558..855856(+)	internal_stop_codon	854552..854554(+),855854..855856(+)		WP_038419884.1	TonB-dependent siderophore receptor	98.1	60.3	25.4
MGA_813	LOCUS_08040	sequence1:864409..865605(+)	partial			WP_005897873.1	YadA-like family protein	61.1	38.5	26.7
MGA_817	LOCUS_08080	sequence1:869648..869914(+)	partial			WP_002263126.1	suppressor of fused domain protein	94.3	36.6	46.5
MGA_822	LOCUS_08130	sequence1:873278..873487(+)	internal_stop_codon	873236..873238(+)		WP_000885335.1	helix-turn-helix transcriptional regulator	43.5	41.7	90.0
MGA_824	LOCUS_08150	sequence1:874785..875264(+)	partial			WP_002681161.1	ABC transporter ATP-binding protein	98.7	27.4	86.6
MGA_826	LOCUS_08170	sequence1:876990..877391(+)	partial			WP_011861959.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	99.2	29.1	56.1
MGA_828	LOCUS_08190	sequence1:878716..881382(+)	partial			WP_013230933.1	DEAD/DEAH box helicase	54.1	72.7	28.7
MGA_832	LOCUS_08220	sequence1:885466..885981(+)	partial			WP_011016683.1	hypothetical protein	50.3	51.9	38.4
MGA_834	LOCUS_08240	sequence1:886377..887153(+)	partial			WP_219718821.1	hypothetical protein	97.7	47.7	36.2
MGA_851	LOCUS_08410	sequence1:907096..907974(-)	partial			WP_012545662.1	PBP1A family penicillin-binding protein	64.0	31.5	51.3
MGA_861	LOCUS_08510	sequence1:915751..916791(+)	partial			WP_007052464.1	WYL domain-containing protein	41.6	39.9	26.0
MGA_871	LOCUS_08610	sequence1:927134..927580(+)	partial			WP_011389045.1	hypothetical protein	75.0	72.1	52.3
MGA_873	LOCUS_08630	sequence1:928365..929435(+)	partial			WP_010884049.1	ABC transporter permease	80.1	72.4	32.1
MGA_877	LOCUS_08670	sequence1:934988..935575(+)	partial			WP_011948050.1	exonuclease domain-containing protein	99.0	65.4	36.6
MGA_880	LOCUS_08700	sequence1:939969..940580(-)	partial			WP_011962669.1	TetR family transcriptional regulator	63.1	61.8	25.0
MGA_927	LOCUS_09170	sequence1:975513..976742(+)	partial			WP_012583084.1	glycosyltransferase family 9 protein	78.5	41.6	23.0
MGA_933	LOCUS_09230	sequence1:982036..983034(+)	partial			WP_010870080.1	tellurite-resistance/dicarboxylate transporter	66.0	69.5	25.3
MGA_949	LOCUS_09390	sequence1:1002594..1003628(+)	partial			WP_162177726.1	copper amine oxidase N-terminal domain-containing protein	86.6	48.8	24.0
MGA_975	LOCUS_09630	sequence1:1028313..1028645(-)	partial			WP_011861369.1	AAA family ATPase	95.5	19.1	49.5
MGA_977	LOCUS_09650	sequence1:1029043..1029279(-)	frameshift		1029084	WP_011861368.1	single-strand DNA-binding protein	85.9	30.6	55.2
MGA_987	LOCUS_09750	sequence1:1038644..1039660(-)	partial			WP_000212693.1	zeta toxin family protein	54.1	59.7	23.8
MGA_1004	LOCUS_09920	sequence1:1059505..1060722(+)	partial			WP_012533907.1	type IV pilus secretin PilQ	89.4	72.2	26.6
MGA_1006	LOCUS_09940	sequence1:1062705..1063322(-)	partial			WP_012048344.1	hypothetical protein	86.8	74.9	30.3
MGA_1010	LOCUS_09980	sequence1:1065637..1066059(+)	partial			WP_011391677.1	single-stranded DNA-binding protein	70.0	62.3	51.0
MGA_1019	LOCUS_10070	sequence1:1072384..1073280(+)	frameshift		1073265	WP_010964034.1	ribonuclease R	94.3	38.8	47.2
MGA_1020	LOCUS_10080	sequence1:1073382..1074416(+)	frameshift		1073268	WP_011476190.1	ribonuclease R	91.6	39.5	44.9
MGA_1027	LOCUS_10140	sequence1:1083665..1085110(+)	partial			WP_010903459.1	Na+/H+ antiporter NhaC family protein	72.1	72.2	25.8
MGA_1034	LOCUS_10200	sequence1:1092416..1092625(+)	internal_stop_codon	1092623..1092625(+)		WP_001281641.1	ISL3 family transposase	95.7	15.8	97.0
MGA_1035	LOCUS_10210	sequence1:1092746..1093750(+)	internal_stop_codon	1092623..1092625(+)		WP_001281642.1	ISL3 family transposase	100.0	76.6	97.9
MGA_1036	LOCUS_10220	sequence1:1093740..1094261(+)	partial			WP_011860782.1	ATP-binding protein	90.8	55.5	62.4
MGA_1038	LOCUS_10240	sequence1:1094425..1094739(+)	internal_stop_codon	1094404..1094406(+)		WP_011861354.1	PcfB family protein	100.0	64.6	68.3
MGA_1039	LOCUS_10250	sequence1:1094736..1095065(+)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	92.7	40.2	51.4
MGA_1040	LOCUS_10260	sequence1:1095265..1095459(+)	frameshift,internal_stop_codon	1095072..1095074(+)	1095128,1095047	WP_010922216.1	phage antirepressor KilAC domain-containing protein	85.9	22.2	54.5
MGA_1041	LOCUS_10270	sequence1:1095452..1095847(+)	frameshift		1095751	WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	78.6	17.3	52.4
MGA_1042	LOCUS_10280	sequence1:1095871..1096161(+)	frameshift,internal_stop_codon	1096160..1096162(+)	1095751	WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	100.0	16.2	86.5
MGA_1043	LOCUS_10290	sequence1:1096373..1096510(+)	frameshift		1096480	WP_011861368.1	single-strand DNA-binding protein	88.9	18.3	52.5
MGA_1044	LOCUS_10300	sequence1:1096507..1097028(+)	frameshift		1096480	WP_011861368.1	single-strand DNA-binding protein	100.0	79.5	60.9
MGA_1056	LOCUS_10420	sequence1:1105426..1105608(-)	internal_stop_codon	1105426..1105428(-)		WP_003114403.1	RhuM family protein	90.0	30.9	53.7
MGA_1058	LOCUS_10440	sequence1:1106592..1106747(+)	frameshift		1106738	WP_158580290.1	YadA-like family protein	88.2	1.1	48.1
MGA_1060	LOCUS_10460	sequence1:1107065..1107595(+)	internal_stop_codon	1107035..1107037(+)		WP_158580290.1	YadA-like family protein	73.9	2.6	31.6
MGA_1076	LOCUS_10620	sequence1:1121013..1122287(+)	partial			WP_012047863.1	chromosome segregation protein SMC	87.3	32.1	39.6
MGA_1077	LOCUS_10630	sequence1:1122278..1124569(+)	frameshift		1122254	WP_011861158.1	chromosome segregation protein SMC	98.6	64.2	29.1
MGA_1080	LOCUS_10660	sequence1:1127189..1128166(-)	partial			WP_010964063.1	LysR family transcriptional regulator	61.5	65.5	29.0
MGA_1104	LOCUS_10890	sequence1:1152864..1153835(+)	partial			WP_071541694.1	D-alanyl-D-alanine carboxypeptidase family protein	76.8	64.7	39.0
MGA_1128	LOCUS_11130	sequence1:1179380..1180648(+)	partial			WP_010966270.1	G5 and 3D domain-containing protein	48.3	52.0	30.2
MGA_1141	LOCUS_11260	sequence1:1190708..1194088(+)	partial			WP_003243453.1	transcription-repair coupling factor	71.9	69.6	43.2
MGA_1149	LOCUS_11340	sequence1:1202218..1202979(+)	frameshift		1202209	WP_004081072.1	bifunctional phosphoglycerate kinase/triose-phosphate isomerase	92.5	36.2	48.1
MGA_1163	LOCUS_11480	sequence1:1217445..1218026(+)	partial			WP_001206416.1	5-formyltetrahydrofolate cyclo-ligase	70.5	71.4	41.0
MGA_1174	LOCUS_11590	sequence1:1225812..1226189(-)	partial			WP_010942420.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	80.0	70.1	38.0
MGA_1179	LOCUS_11640	sequence1:1230462..1230836(+)	partial			WP_164920634.1	biopolymer transporter ExbD	96.8	72.7	30.8
MGA_1201	LOCUS_11860	sequence1:1252694..1253551(+)	partial			WP_002288811.1	carbohydrate deacetylase	53.3	56.7	36.1
MGA_1225	LOCUS_12030	sequence4:48..611(+)	frameshift		575	WP_209421102.1	IS3 family transposase	78.1	32.2	37.1
MGA_1226	LOCUS_12040	sequence4:620..1423(+)	frameshift		575	WP_209421102.1	IS3 family transposase	100.0	58.8	51.5
MGA_1230	LOCUS_12060	sequence7:1..640(+)	partial			WP_011861371.1	relaxase/mobilization nuclease domain-containing protein	95.3	45.6	57.9
