{
    "type": "genome",
    "identifier": "GCF_000195295.1",
    "organism": "Desulfobacca acetoxidans DSM 11109",
    "title": "Desulfobacca acetoxidans DSM 11109",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000195295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00713603",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "880072",
        "species_taxid": "60893",
        "organism_name": "Desulfobacca acetoxidans DSM 11109",
        "infraspecific_name": "strain=DSM 11109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/04/07",
        "asm_name": "ASM19529v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000195295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/195/295/GCF_000195295.1_ASM19529v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3282536",
        "genome_size_ungapped": "3282536",
        "gc_percent": "53.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-09-06",
        "total_gene_count": "2980",
        "protein_coding_gene_count": "2902",
        "non_coding_gene_count": "54",
        "pubmed_id": "21886866"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-04-07",
    "dateModified": "2011-04-07",
    "datePublished": "2011-04-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacca acetoxidans DSM 11109"
        ],
        "sample_taxid": [
            "880072"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "0.930 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3282536",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3282536",
        "N50 (bp)": "3282536",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.9",
        "Number of CDSs": "2945",
        "Average Protein Length": "315.4",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfobacca acetoxidans",
                "strain": "strain=DSM 11109",
                "accession": "GCA_000195295.1",
                "taxid": 60893,
                "species_taxid": 60893,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1094,
                "total_fragments": 1094,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000195295.1",
                "gtdb_species": "s__Desulfobacca acetoxidans",
                "ani": 100.0,
                "matched_fragments": 1094,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__Desulfobaccaceae;g__Desulfobacca",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.47",
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016874895.1",
                "gtdb_species": "s__Desulfobacca sp016874895",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__Desulfobaccaceae;g__Desulfobacca",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002049795.1",
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                "matched_fragments": 75,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__Desulfobaccaceae;g__Desulfobacca_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.81",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016875015.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp016875015",
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                "matched_fragments": 88,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_018897875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011358955.1",
                "gtdb_species": "s__DTKJ01 sp011358955",
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                "matched_fragments": 54,
                "total_fragments": 1094,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__DTKJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016874915.1",
                "gtdb_species": "s__0-14-0-80-60-11 sp016874915",
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                "matched_fragments": 75,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobaccia;o__Desulfobaccales;f__0-14-0-80-60-11;g__0-14-0-80-60-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.113,
        "cell_length": 0.278,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.3,
        "genome_size": 3282537.0,
        "gc_content": 52.9,
        "coding_genes": 2868.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfobacca",
        "acetoxidans",
        "DSM",
        "11109"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}