{ "type": "genome", "identifier": "GCF_000195335.1", "organism": "Marinithermus hydrothermalis DSM 14884", "title": "Marinithermus hydrothermalis DSM 14884", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute (JGI-PGF)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000195335.1", "bioproject": "PRJNA224116", "biosample": "SAMN00713602", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "869210", "species_taxid": "186192", "organism_name": "Marinithermus hydrothermalis DSM 14884", "infraspecific_name": "strain=DSM 14884", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/04/07", "asm_name": "ASM19533v1", "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)", "gbrs_paired_asm": "GCA_000195335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/195/335/GCF_000195335.1_ASM19533v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2269167", "genome_size_ungapped": "2269167", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000195335.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "2283", "protein_coding_gene_count": "2192", "non_coding_gene_count": "60", "pubmed_id": "22675595" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-04-07", "dateModified": "2011-04-07", "datePublished": "2011-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinithermus hydrothermalis DSM 14884" ], "sample_taxid": [ "869210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: off Japan" ], "sample_host_location_id": [], "data_size": "0.619 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2269167", "Number of Sequences": "1", "Longest Sequences (bp)": "2269167", "N50 (bp)": "2269167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "2277", "Average Protein Length": "309.9", "Coding Ratio (%)": "93.3", "Number of rRNAs": "7", "Number of tRNAs": "56", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinithermus hydrothermalis", "strain": "strain=DSM 14884", "accession": "GCA_000195335.1", "taxid": 186192, "species_taxid": 186192, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 756, "total_fragments": 756, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanithermus profundus", "strain": "strain=DSM 14977", "accession": "GCA_000183745.1", "taxid": 187137, "species_taxid": 187137, "relation_to_type": "type", "validated": true, "ani": 78.0835, "matched_fragments": 232, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 77.6292, "matched_fragments": 188, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanithermus desulfurans", "strain": "strain=NBRC 100063", "accession": "GCA_007991015.1", "taxid": 227924, "species_taxid": 227924, "relation_to_type": "type", "validated": true, "ani": 77.6044, "matched_fragments": 219, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanithermus desulfurans", "strain": "strain=DSM 15757", "accession": "GCA_014201675.1", "taxid": 227924, "species_taxid": 227924, "relation_to_type": "type", "validated": true, "ani": 77.5305, "matched_fragments": 223, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=HB8", "accession": "GCA_000091545.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 77.5181, "matched_fragments": 179, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus thermophilus", "strain": "strain=JCM10941", "accession": "GCA_019973715.1", "taxid": 274, "species_taxid": 274, "relation_to_type": "type", "validated": true, "ani": 77.3753, "matched_fragments": 178, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 77.2673, "matched_fragments": 186, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Calidithermus chliarophilus", "strain": "strain=DSM 9957", "accession": "GCA_000430045.1", "taxid": 52023, "species_taxid": 52023, "relation_to_type": "type", "validated": true, "ani": 77.0913, "matched_fragments": 216, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tengchongensis", "strain": "strain=YIM 77924", "accession": "GCA_021462405.1", "taxid": 1214928, "species_taxid": 1214928, "relation_to_type": "type", "validated": true, "ani": 77.0009, "matched_fragments": 178, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Calidithermus timidus", "strain": "strain=DSM 17022", "accession": "GCA_000373205.1", "taxid": 307124, "species_taxid": 307124, "relation_to_type": "type", "validated": true, "ani": 76.908, "matched_fragments": 158, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Calidithermus roseus", "strain": "strain=NBRC 110900", "accession": "GCA_003574095.1", "taxid": 1644118, "species_taxid": 1644118, "relation_to_type": "type", "validated": true, "ani": 76.5639, "matched_fragments": 164, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus pimensis", "strain": "strain=DSM 21231", "accession": "GCA_000519345.1", "taxid": 309888, "species_taxid": 309888, "relation_to_type": "type", "validated": true, "ani": 76.1405, "matched_fragments": 106, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus gobiensis", "strain": "strain=I-0", "accession": "GCA_000252445.1", "taxid": 502394, "species_taxid": 502394, "relation_to_type": "type", "validated": true, "ani": 76.0135, "matched_fragments": 89, "total_fragments": 756, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000195335.1", "gtdb_species": "s__Marinithermus hydrothermalis", "ani": 100.0, "matched_fragments": 756, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Marinithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000183745.1", "gtdb_species": "s__Oceanithermus profundus", "ani": 78.0701, "matched_fragments": 231, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015494055.1", "gtdb_species": "s__Oceanithermus sp015494055", "ani": 77.664, "matched_fragments": 189, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000091545.1", "gtdb_species": "s__Thermus thermophilus", "ani": 77.5889, "matched_fragments": 180, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.7334, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_014201675.1", "gtdb_species": "s__Oceanithermus desulfurans", "ani": 77.5305, "matched_fragments": 223, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_015490435.1", "gtdb_species": "s__WFXV01 sp015490435", "ani": 77.4957, "matched_fragments": 164, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__WFXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102145.1", "gtdb_species": "s__Thermus arciformis", "ani": 77.453, "matched_fragments": 186, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011330655.1", "gtdb_species": "s__Oceanithermus profundus_A", "ani": 77.1514, "matched_fragments": 171, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000373205.1", "gtdb_species": "s__Calidithermus timidus", "ani": 76.9527, "matched_fragments": 158, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Calidithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003574095.1", "gtdb_species": "s__Calidithermus roseus", "ani": 76.5515, "matched_fragments": 163, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Calidithermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011053565.1", "gtdb_species": "s__Thermus islandicus_A", "ani": 76.3039, "matched_fragments": 98, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000252445.1", "gtdb_species": "s__Deinococcus gobiensis", "ani": 76.0095, "matched_fragments": 88, "total_fragments": 756, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Deinococcaceae;g__Deinococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": -0.421, "growth_tmp": 68.8, "optimum_tmp": 67.5, "optimum_ph": 7.0, "genome_size": 2269167.6, "gc_content": 68.09, "coding_genes": 2180.667, "rRNA16S_genes": 3.0, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinithermus", "hydrothermalis", "DSM", "14884" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }