{
    "type": "genome",
    "identifier": "GCF_000196175.1",
    "organism": "Bdellovibrio bacteriovorus HD100",
    "title": "Bdellovibrio bacteriovorus HD100",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Max-Planck-Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000196175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA3138335",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "264462",
        "species_taxid": "959",
        "organism_name": "Bdellovibrio bacteriovorus HD100",
        "infraspecific_name": "strain=HD100",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2004/02/10",
        "asm_name": "ASM19617v1",
        "asm_submitter": "Max-Planck-Institute",
        "gbrs_paired_asm": "GCA_000196175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/175/GCF_000196175.1_ASM19617v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3782950",
        "genome_size_ungapped": "3782950",
        "gc_percent": "50.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000196175.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3601",
        "protein_coding_gene_count": "3550",
        "non_coding_gene_count": "46",
        "pubmed_id": "14752164"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2004-02-10",
    "dateModified": "2004-02-10",
    "datePublished": "2004-02-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bdellovibrio bacteriovorus HD100"
        ],
        "sample_taxid": [
            "264462"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.073 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3782950",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3782950",
        "N50 (bp)": "3782950",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.6",
        "Number of CDSs": "3571",
        "Average Protein Length": "324.7",
        "Coding Ratio (%)": "92.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bdellovibrio bacteriovorus",
                "strain": "strain=HD100",
                "accession": "GCA_000196175.1",
                "taxid": 959,
                "species_taxid": 959,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1259,
                "total_fragments": 1260,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000196175.1",
                "gtdb_species": "s__Bdellovibrio bacteriovorus",
                "ani": 100.0,
                "matched_fragments": 1258,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002208115.1",
                "gtdb_species": "s__Bdellovibrio bacteriovorus_C",
                "ani": 90.9063,
                "matched_fragments": 1134,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317895.1",
                "gtdb_species": "s__Bdellovibrio bacteriovorus_F",
                "ani": 90.3164,
                "matched_fragments": 1138,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592755.1",
                "gtdb_species": "s__Bdellovibrio bacteriovorus_E",
                "ani": 79.1706,
                "matched_fragments": 436,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592745.1",
                "gtdb_species": "s__Bdellovibrio bacteriovorus_B",
                "ani": 79.1057,
                "matched_fragments": 433,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006874625.1",
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                "matched_fragments": 322,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000786105.1",
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                "matched_fragments": 372,
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                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_017745015.1",
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                "matched_fragments": 263,
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                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592735.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_013360185.1",
                "gtdb_species": "s__Bdellovibrio sp013360185",
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                "matched_fragments": 283,
                "total_fragments": 1260,
                "gtdb_taxonomy": "d__Bacteria;p__Bdellovibrionota;c__Bdellovibrionia;o__Bdellovibrionales;f__Bdellovibrionaceae;g__Bdellovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.023,
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        "growth_tmp": 29.0,
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        "genome_size": 3678691.818,
        "gc_content": 49.351,
        "coding_genes": 3385.909,
        "rRNA16S_genes": 1.833,
        "tRNA_genes": 34.857,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
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    },
    "_genome_taxon": [
        "Bdellovibrio",
        "bacteriovorus",
        "HD100"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}