{ "type": "genome", "identifier": "GCF_000196315.1", "organism": "Croceibacter atlanticus HTCC2559", "title": "Croceibacter atlanticus HTCC2559", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196315.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603922", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "216432", "species_taxid": "313588", "organism_name": "Croceibacter atlanticus HTCC2559", "infraspecific_name": "strain=HTCC2559", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/06/09", "asm_name": "ASM19631v1", "asm_submitter": "The Gordon and Betty Moore Foundation Marine Microbiology Initiative", "gbrs_paired_asm": "GCA_000196315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/315/GCF_000196315.1_ASM19631v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2952962", "genome_size_ungapped": "2952962", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000196315.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2720", "protein_coding_gene_count": "2668", "non_coding_gene_count": "46", "pubmed_id": "20639333" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-06-09", "dateModified": "2010-06-09", "datePublished": "2010-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Croceibacter atlanticus HTCC2559" ], "sample_taxid": [ "216432" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2952962", "Number of Sequences": "1", "Longest Sequences (bp)": "2952962", "N50 (bp)": "2952962", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.9", "Number of CDSs": "2675", "Average Protein Length": "336.8", "Coding Ratio (%)": "91.5", "Number of rRNAs": "6", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Croceibacter atlanticus", "strain": "strain=HTCC2559", "accession": "GCA_000196315.1", "taxid": 313588, "species_taxid": 313588, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 984, "total_fragments": 984, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014284085.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.4411, "matched_fragments": 142, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella echinorum", "strain": "strain=KCTC 22026", "accession": "GCA_014297365.1", "taxid": 538189, "species_taxid": 538189, "relation_to_type": "type", "validated": true, "ani": 77.4411, "matched_fragments": 142, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella blandensis", "strain": "strain=MED217", "accession": "GCA_000152985.1", "taxid": 360293, "species_taxid": 360293, "relation_to_type": "type", "validated": true, "ani": 77.3014, 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"below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.9578, "matched_fragments": 100, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia mobilis", "strain": "strain=DSM 19841", "accession": "GCA_000423405.1", "taxid": 369791, "species_taxid": 369791, "relation_to_type": "type", "validated": true, "ani": 76.9347, "matched_fragments": 125, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 76.915, "matched_fragments": 144, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 76.8465, "matched_fragments": 144, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 76.8397, "matched_fragments": 90, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.7882, "matched_fragments": 123, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.7703, "matched_fragments": 143, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 76.7701, "matched_fragments": 124, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella wichelsiae", "strain": "strain=Z738", "accession": "GCA_013403925.1", "taxid": 2697007, "species_taxid": 2697007, "relation_to_type": "type", "validated": true, "ani": 76.7364, "matched_fragments": 135, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 76.7231, "matched_fragments": 125, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovimonas spongiae", "strain": "strain=HN-E26", "accession": "GCA_003944795.1", "taxid": 2494697, "species_taxid": 2494697, "relation_to_type": "type", "validated": true, "ani": 76.6946, "matched_fragments": 127, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter vaceletii", "strain": "strain=DSM 25230", "accession": "GCA_003634105.1", "taxid": 1206816, "species_taxid": 1206816, "relation_to_type": "type", "validated": true, "ani": 76.6794, "matched_fragments": 124, "total_fragments": 984, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.6073, 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