{ "type": "genome", "identifier": "GCF_000196435.1", "organism": "Bartonella tribocorum CIP 105476", "title": "Bartonella tribocorum CIP 105476", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics Center for Infectious Disease Dynamics, Penn State University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196435.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138339", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "382640", "species_taxid": "85701", "organism_name": "Bartonella tribocorum CIP 105476", "infraspecific_name": "strain=type strain:506 = CIP 105476", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2007/11/25", "asm_name": "ASM19643v1", "asm_submitter": "Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics Center for Infectious Disease Dynamics, Penn State University", "gbrs_paired_asm": "GCA_000196435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/435/GCF_000196435.1_ASM19643v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2642404", "genome_size_ungapped": "2642404", "gc_percent": "39.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "2332", "protein_coding_gene_count": "2163", "non_coding_gene_count": "52", "pubmed_id": "18037886" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2007-11-25", "dateModified": "2007-11-25", "datePublished": "2007-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella tribocorum CIP 105476" ], "sample_taxid": [ "382640" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.729 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2642404", "Number of Sequences": "2", "Longest Sequences (bp)": "2619061", "N50 (bp)": "2619061", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.8", "Number of CDSs": "2301", "Average Protein Length": "285.6", "Coding Ratio (%)": "74.6", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella tribocorum", "strain": "strain=type strain:506 = CIP 105476", "accession": "GCA_000196435.1", "taxid": 85701, "species_taxid": 85701, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 858, "total_fragments": 880, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 93.4964, "matched_fragments": 673, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_902825135.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 90.2809, "matched_fragments": 602, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_000518165.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 90.2633, "matched_fragments": 599, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella gabonensis", "strain": "strain=669", "accession": "GCA_903679515.1", "taxid": 2699889, "species_taxid": 2699889, "relation_to_type": "type", "validated": true, "ani": 90.2423, "matched_fragments": 563, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=F9251", "accession": "GCA_000278315.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 90.2103, "matched_fragments": 613, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella mastomydis", "strain": "strain=008", "accession": "GCA_900185775.1", "taxid": 1820002, "species_taxid": 1820002, "relation_to_type": "type", "validated": true, "ani": 90.0465, "matched_fragments": 630, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 89.2849, "matched_fragments": 653, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 89.0992, "matched_fragments": 525, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella grahamii", "strain": "strain=ATCC 700132", "accession": "GCA_000518085.1", "taxid": 33045, "species_taxid": 33045, "relation_to_type": "type", "validated": true, "ani": 88.9244, "matched_fragments": 620, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella grahamii", "strain": "strain=NCTC12860", "accession": "GCA_900445635.1", "taxid": 33045, "species_taxid": 33045, "relation_to_type": "type", "validated": true, "ani": 88.8024, "matched_fragments": 671, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella massiliensis", "strain": "strain=OS09", "accession": "GCA_902150025.1", "taxid": 929795, "species_taxid": 929795, "relation_to_type": "type", "validated": true, "ani": 88.7847, "matched_fragments": 633, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.9171, "matched_fragments": 504, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.8562, "matched_fragments": 500, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. berkhoffii", "strain": "strain=ATCC 51672", "accession": "GCA_000518105.1", "taxid": 40933, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.5837, "matched_fragments": 493, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. berkhoffii", "strain": "strain=CIP 104960", "accession": "GCA_902825225.1", "taxid": 40933, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.5019, "matched_fragments": 495, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.3024, "matched_fragments": 466, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.0766, "matched_fragments": 478, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.0266, "matched_fragments": 468, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=DSM 102055", "accession": "GCA_014201435.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.0082, "matched_fragments": 464, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=CCUG 50770", "accession": "GCA_902728115.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 82.0014, "matched_fragments": 463, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella rattaustraliani", "strain": "strain=AUST/NH4", "accession": "GCA_000312565.2", "taxid": 481139, "species_taxid": 481139, "relation_to_type": "type", "validated": true, "ani": 81.7509, "matched_fragments": 506, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella bacilliformis", "strain": "strain=KC583; ATCC 35685", "accession": "GCA_000015445.1", "taxid": 774, "species_taxid": 774, "relation_to_type": "type", "validated": true, "ani": 78.8806, "matched_fragments": 269, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000196435.1", "gtdb_species": "s__Bartonella tribocorum", "ani": 100.0, "matched_fragments": 857, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003606325.2", "gtdb_species": "s__Bartonella kosoyi", "ani": 93.5398, "matched_fragments": 671, 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