{ "type": "genome", "identifier": "GCF_000196455.1", "organism": "Acetoanaerobium sticklandii", "title": "Acetoanaerobium sticklandii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Genoscope-CEA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196455.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138340", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1511", "species_taxid": "1511", "organism_name": "Acetoanaerobium sticklandii", "infraspecific_name": "strain=DSM 519", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/10/16", "asm_name": "ASM19645v1", "asm_submitter": "Genoscope-CEA", "gbrs_paired_asm": "GCA_000196455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/455/GCF_000196455.1_ASM19645v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2715461", "genome_size_ungapped": "2715461", "gc_percent": "33.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000196455.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "2611", "protein_coding_gene_count": "2512", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-10-16", "dateModified": "2010-10-16", "datePublished": "2010-10-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetoanaerobium sticklandii DSM 519" ], "sample_taxid": [ "499177" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2715461", "Number of Sequences": "1", "Longest Sequences (bp)": "2715461", "N50 (bp)": "2715461", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.3", "Number of CDSs": "2555", "Average Protein Length": "317.9", "Coding Ratio (%)": "89.7", "Number of rRNAs": "18", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetoanaerobium sticklandii", "strain": "strain=DSM 519", "accession": "GCA_000196455.1", "taxid": 1511, "species_taxid": 1511, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 905, "total_fragments": 905, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acetoanaerobium noterae", "strain": "strain=ATCC 35199", "accession": "GCA_900168025.1", "taxid": 745369, "species_taxid": 745369, "relation_to_type": "type", "validated": true, "ani": 96.2259, "matched_fragments": 782, "total_fragments": 905, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Romboutsia hominis", "strain": "strain=FRIFI", "accession": "GCA_900002575.1", "taxid": 1507512, "species_taxid": 1507512, "relation_to_type": "type", "validated": true, "ani": 78.9101, "matched_fragments": 59, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetoanaerobium pronyense", "strain": "strain=DSM 27512", "accession": "GCA_017874355.1", "taxid": 1482736, "species_taxid": 1482736, "relation_to_type": "type", "validated": true, "ani": 77.8311, "matched_fragments": 163, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniclostridium sordellii", "strain": "strain=ATCC9714", "accession": "GCA_000953675.1", "taxid": 1505, "species_taxid": 1505, "relation_to_type": "type", "validated": true, "ani": 76.3336, "matched_fragments": 54, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter othiniensis", "strain": "strain=08-306576", "accession": "GCA_000808015.1", "taxid": 1577792, "species_taxid": 1577792, "relation_to_type": "type", "validated": true, "ani": 76.1366, "matched_fragments": 52, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidibacter formicigenes", "strain": "strain=DSM 15518", "accession": "GCA_900142235.1", "taxid": 227138, "species_taxid": 227138, "relation_to_type": "type", "validated": true, "ani": 75.9771, "matched_fragments": 85, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=ATCC 638", "accession": "GCA_006802875.1", "taxid": 1490, "species_taxid": 1490, "relation_to_type": "type", "validated": true, "ani": 75.8256, "matched_fragments": 54, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=DSM 1288", "accession": "GCA_000439105.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 75.6304, "matched_fragments": 58, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=ATCC 14880", "accession": "GCA_000373865.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 75.4668, "matched_fragments": 58, "total_fragments": 905, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"gtdb_species": "s__Paraclostridium sordellii", "ani": 76.3307, "matched_fragments": 54, "total_fragments": 905, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_000808015.1", "gtdb_species": "s__Terrisporobacter othiniensis", "ani": 76.1366, "matched_fragments": 52, "total_fragments": 905, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Terrisporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900142235.1", 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"bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Acetoanaerobium", "sticklandii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }