{ "type": "genome", "identifier": "GCF_000196675.2", "organism": "Pseudonocardia dioxanivorans CB1190", "title": "Pseudonocardia dioxanivorans CB1190", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196675.2", "bioproject": "PRJNA224116", "biosample": "SAMN00713596", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "675635", "species_taxid": "240495", "organism_name": "Pseudonocardia dioxanivorans CB1190", "infraspecific_name": "strain=CB1190", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/03/28", "asm_name": "ASM19667v2", "asm_submitter": "US DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000196675.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/675/GCF_000196675.2_ASM19667v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7440794", "genome_size_ungapped": "7440794", "gc_percent": "73.000000", "replicon_count": "4", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000196675.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7084", "protein_coding_gene_count": "6907", "non_coding_gene_count": "59", "pubmed_id": "21725009" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-03-28", "dateModified": "2011-03-28", "datePublished": "2011-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia dioxanivorans CB1190" ], "sample_taxid": [ "675635" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.92, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7440794", "Number of Sequences": "6", "Longest Sequences (bp)": "7096571", "N50 (bp)": "7096571", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "7093", "Average Protein Length": "314.2", "Coding Ratio (%)": "89.8", "Number of rRNAs": "9", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2478, "total_fragments": 2479, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudonocardia sulfidoxydans", "strain": "strain=NBRC 16205", "accession": "GCA_007989085.1", "taxid": 54011, "species_taxid": 54011, "relation_to_type": "type", "validated": true, "ani": 85.8531, "matched_fragments": 1556, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acidicola", "strain": "strain=K10HN5", "accession": "GCA_012911935.1", "taxid": 2724939, "species_taxid": 2724939, "relation_to_type": "type", "validated": true, "ani": 80.8373, "matched_fragments": 1107, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia bannensis", "strain": "strain=DSM 45300", "accession": "GCA_012911875.1", "taxid": 630973, "species_taxid": 630973, "relation_to_type": "type", "validated": true, "ani": 80.604, "matched_fragments": 1021, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kujensis", "strain": "strain=KCTC 29062", "accession": "GCA_021283305.1", "taxid": 1128675, "species_taxid": 1128675, "relation_to_type": "type", "validated": true, "ani": 80.456, "matched_fragments": 1214, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oceani", "strain": "strain=KRD185", "accession": "GCA_019263585.2", "taxid": 2792013, "species_taxid": 2792013, "relation_to_type": "type", "validated": true, "ani": 80.4042, "matched_fragments": 1200, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 80.2851, "matched_fragments": 1027, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia terrae", "strain": "strain=RS11V-5", "accession": "GCA_021343995.1", "taxid": 2905831, "species_taxid": 2905831, "relation_to_type": "type", "validated": true, "ani": 80.1693, "matched_fragments": 1192, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia sediminis", "strain": "strain=DSM 45779", "accession": "GCA_004217185.1", "taxid": 1397368, "species_taxid": 1397368, "relation_to_type": "type", "validated": true, "ani": 79.729, "matched_fragments": 1049, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oroxyli", "strain": "strain=CGMCC 4.3143", "accession": "GCA_900102195.1", "taxid": 366584, "species_taxid": 366584, "relation_to_type": "type", "validated": true, "ani": 79.7093, "matched_fragments": 1031, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia xinjiangensis", "strain": "strain=JCM 11839", "accession": "GCA_012911925.1", "taxid": 75289, "species_taxid": 75289, "relation_to_type": "type", "validated": true, "ani": 79.5898, "matched_fragments": 999, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hierapolitana", "strain": "strain=DSM 45671", "accession": "GCA_007994075.1", "taxid": 1128676, "species_taxid": 1128676, "relation_to_type": "type", "validated": true, "ani": 79.3471, "matched_fragments": 1102, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia antarctica", "strain": "strain=DSM 44749", "accession": "GCA_013408715.1", "taxid": 237656, "species_taxid": 237656, "relation_to_type": "type", "validated": true, "ani": 79.1572, "matched_fragments": 1039, "total_fragments": 2479, "ani_threshold": 95, "status": "below_threshold" } ], 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