{ "type": "genome", "identifier": "GCF_000196795.1", "organism": "Acinetobacter oleivorans DR1", "title": "Acinetobacter oleivorans DR1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Division of Environmental Science and Ecological Engineering, Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196795.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603211", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "436717", "species_taxid": "1148157", "organism_name": "Acinetobacter oleivorans DR1", "infraspecific_name": "strain=DR1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2010/06/21", "asm_name": "ASM19679v1", "asm_submitter": "Division of Environmental Science and Ecological Engineering, Korea University", "gbrs_paired_asm": "GCA_000196795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/795/GCF_000196795.1_ASM19679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4152543", "genome_size_ungapped": "4152543", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000196795.1-RS_2024_11_19", "annotation_date": "2024-11-19", "total_gene_count": "3963", "protein_coding_gene_count": "3813", "non_coding_gene_count": "93", "pubmed_id": "20639327" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2010-06-21", "dateModified": "2010-06-21", "datePublished": "2010-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter oleivorans DR1" ], "sample_taxid": [ "436717" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4152543", "Number of Sequences": "1", "Longest Sequences (bp)": "4152543", "N50 (bp)": "4152543", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "3862", "Average Protein Length": "313.6", "Coding Ratio (%)": "87.5", "Number of rRNAs": "18", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter oleivorans", "strain": "strain=DR1", "accession": "GCA_000196795.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 1382, "total_fragments": 1384, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter oleivorans", "strain": "strain=KCTC 23045", "accession": "GCA_000836035.1", "taxid": 1148157, "species_taxid": 1148157, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9808, "matched_fragments": 1357, "total_fragments": 1384, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter calcoaceticus", "strain": "strain=NCTC12983", "accession": "GCA_900444805.1", "taxid": 471, "species_taxid": 471, "relation_to_type": "type", "validated": true, "ani": 91.911, "matched_fragments": 1161, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter calcoaceticus", "strain": "strain=CIP 81.8", "accession": "GCA_000368965.1", "taxid": 471, "species_taxid": 471, "relation_to_type": "type", "validated": true, "ani": 91.889, "matched_fragments": 1156, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=FDAARGOS 1399", "accession": "GCA_019047205.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 91.5392, "matched_fragments": 1122, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 91.5132, "matched_fragments": 1065, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lactucae", "strain": "strain=NRRL B-41902", "accession": "GCA_001605885.1", "taxid": 1785128, "species_taxid": 1785128, "relation_to_type": "type", "validated": true, "ani": 91.3945, "matched_fragments": 1125, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 88.1757, "matched_fragments": 1101, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 88.1587, "matched_fragments": 1105, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 80.6204, "matched_fragments": 477, "total_fragments": 1384, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000196795.1", "gtdb_species": "s__Acinetobacter oleivorans", "ani": 100.0, "matched_fragments": 1380, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 40, "status": "conclusive" }, { "accession": "GCF_000399665.1", "gtdb_species": "s__Acinetobacter calcoaceticus_B", "ani": 94.1778, "matched_fragments": 1171, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000313935.1", "gtdb_species": "s__Acinetobacter sp000313935", "ani": 93.0094, "matched_fragments": 1106, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000368965.1", "gtdb_species": "s__Acinetobacter calcoaceticus", "ani": 91.8904, "matched_fragments": 1154, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.00", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_013344765.1", "gtdb_species": "s__Acinetobacter lactucae_A", "ani": 91.6178, "matched_fragments": 932, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001605885.1", "gtdb_species": "s__Acinetobacter lactucae", "ani": 91.4075, "matched_fragments": 1124, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_900520355.1", "gtdb_species": "s__Acinetobacter calcoaceticus_C", "ani": 91.3294, "matched_fragments": 1188, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.76", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000399685.1", "gtdb_species": "s__Acinetobacter pittii_E", "ani": 91.1419, "matched_fragments": 1124, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016508255.1", "gtdb_species": "s__Acinetobacter calcoaceticus_E", "ani": 91.112, "matched_fragments": 1108, "total_fragments": 1384, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 4048325.25, "gc_content": 38.687, "coding_genes": 3853.0, "rRNA16S_genes": 6.0, "tRNA_genes": 71.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "oleivorans", "DR1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }