{ "type": "genome", "identifier": "GCF_000196875.2", "organism": "Halomonas elongata DSM 2581", "title": "Halomonas elongata DSM 2581", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max-Planck-Institute of Biochemistry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000196875.2", "bioproject": "PRJNA224116", "biosample": "SAMEA2272784", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "768066", "species_taxid": "2746", "organism_name": "Halomonas elongata DSM 2581", "infraspecific_name": "strain=type strain: DSM 2581", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/31", "asm_name": "ASM19687v2", "asm_submitter": "Max-Planck-Institute of Biochemistry", "gbrs_paired_asm": "GCA_000196875.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/196/875/GCF_000196875.2_ASM19687v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4061825", "genome_size_ungapped": "4061825", "gc_percent": "63.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000196875.2-RS_2024_11_21", "annotation_date": "2024-11-21", "total_gene_count": "3808", "protein_coding_gene_count": "3718", "non_coding_gene_count": "83", "pubmed_id": "20849449" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-31", "dateModified": "2017-01-31", "datePublished": "2017-01-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas elongata DSM 2581" ], "sample_taxid": [ "768066" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4061825", "Number of Sequences": "1", "Longest Sequences (bp)": "4061825", "N50 (bp)": "4061825", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "3755", "Average Protein Length": "323.6", "Coding Ratio (%)": "89.7", "Number of rRNAs": "12", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas elongata", "strain": "strain=type strain: DSM 2581", "accession": "GCA_000196875.2", "taxid": 2746, "species_taxid": 2746, 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95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 81.2925, "matched_fragments": 634, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 81.0461, "matched_fragments": 712, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 80.6946, "matched_fragments": 652, "total_fragments": 1353, "ani_threshold": 95, "status": "below_threshold" }, { 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