{
    "type": "genome",
    "identifier": "GCF_000200595.1",
    "organism": "Helicobacter felis ATCC 49179",
    "title": "Helicobacter felis ATCC 49179",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Wellcome Trust Sanger Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000200595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA2272759",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "936155",
        "species_taxid": "214",
        "organism_name": "Helicobacter felis ATCC 49179",
        "infraspecific_name": "strain=ATCC 49179",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/03/15",
        "asm_name": "ASM20059v1",
        "asm_submitter": "Wellcome Trust Sanger Institute",
        "gbrs_paired_asm": "GCA_000200595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/200/595/GCF_000200595.1_ASM20059v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1672681",
        "genome_size_ungapped": "1672681",
        "gc_percent": "44.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000200595.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "1708",
        "protein_coding_gene_count": "1633",
        "non_coding_gene_count": "45",
        "pubmed_id": "21402865"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-03-15",
    "dateModified": "2011-03-15",
    "datePublished": "2011-03-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Helicobacter felis ATCC 49179"
        ],
        "sample_taxid": [
            "936155"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.469 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1672681",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1672681",
        "N50 (bp)": "1672681",
        "Gap Ratio (%)": "0.000060",
        "GCcontent (%)": "44.5",
        "Number of CDSs": "1678",
        "Average Protein Length": "308.4",
        "Coding Ratio (%)": "92.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Helicobacter felis",
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                "accession": "GCA_000200595.1",
                "taxid": 214,
                "species_taxid": 214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 557,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Helicobacter salomonis",
                "strain": "strain=CIP 105607",
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                "taxid": 56878,
                "species_taxid": 56878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5917,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter labacensis",
                "strain": "strain=L9",
                "accession": "GCA_003660285.1",
                "taxid": 2316079,
                "species_taxid": 2316079,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter vulpis",
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                "accession": "GCA_003660395.1",
                "taxid": 2316076,
                "species_taxid": 2316076,
                "relation_to_type": "type",
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                "ani": 80.407,
                "matched_fragments": 289,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter bizzozeronii",
                "strain": "strain=CIP 105233",
                "accession": "GCA_017979515.1",
                "taxid": 56877,
                "species_taxid": 56877,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4401,
                "matched_fragments": 219,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter mehlei",
                "strain": "strain=L15",
                "accession": "GCA_003660265.1",
                "taxid": 2316080,
                "species_taxid": 2316080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.333,
                "matched_fragments": 224,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000200595.1",
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                "matched_fragments": 557,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
                "min_intra_species_ani": "97.30",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 23,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900197855.1",
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                "total_fragments": 557,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017979425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.52",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900197685.1",
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                "ani": 80.6782,
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                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003660285.1",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            {
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            },
            {
                "accession": "GCF_902196135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Helicobacter",
        "felis",
        "ATCC",
        "49179"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}