{ "type": "genome", "identifier": "GCF_000202835.1", "organism": "Acidiphilium multivorum AIU301", "title": "Acidiphilium multivorum AIU301", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000202835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00060977", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "926570", "species_taxid": "62140", "organism_name": "Acidiphilium multivorum AIU301", "infraspecific_name": "strain=AIU301", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/03/01", "asm_name": "ASM20283v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000202835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/202/835/GCF_000202835.1_ASM20283v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4214744", "genome_size_ungapped": "4214744", "gc_percent": "67.000000", "replicon_count": "9", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000202835.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4017", "protein_coding_gene_count": "3857", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-03-01", "dateModified": "2011-03-01", "datePublished": "2011-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidiphilium multivorum AIU301" ], "sample_taxid": [ "926570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4214744", "Number of Sequences": "9", "Longest Sequences (bp)": "3749411", "N50 (bp)": "3749411", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "3982", "Average Protein Length": "319.3", "Coding Ratio (%)": "90.5", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": 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"below_threshold" }, { "organism_name": "Acidibrevibacterium fodinaquatile", "strain": "strain=G45-3", "accession": "GCA_003352165.1", "taxid": 1969806, "species_taxid": 1969806, "relation_to_type": "type", "validated": true, "ani": 77.3766, "matched_fragments": 346, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas marmotae", "strain": "strain=1318", "accession": "GCA_017654485.1", "taxid": 2768161, "species_taxid": 2768161, "relation_to_type": "type", "validated": true, "ani": 77.2911, "matched_fragments": 283, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 77.1922, "matched_fragments": 407, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila 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