{ "type": "genome", "identifier": "GCF_000204035.1", "organism": "Brevundimonas diminuta ATCC 11568", "title": "Brevundimonas diminuta ATCC 11568", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Indiana University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000204035.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469913", "wgs_master": "ADUI00000000.1", "refseq_category": "na", "taxid": "751586", "species_taxid": "293", "organism_name": "Brevundimonas diminuta ATCC 11568", "infraspecific_name": "strain=ATCC 11568", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/04/13", "asm_name": "ASM20403v1", "asm_submitter": "Indiana University", "gbrs_paired_asm": "GCA_000204035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/204/035/GCF_000204035.1_ASM20403v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3369316", "genome_size_ungapped": "3240481", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "302", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000204035.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "3414", "protein_coding_gene_count": "3252", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-04-13", "dateModified": "2011-04-13", "datePublished": "2011-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas diminuta ATCC 11568" ], "sample_taxid": [ "751586" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3369316", "Number of Sequences": "8", "Longest Sequences (bp)": "2631526", "N50 (bp)": "2631526", "Gap Ratio (%)": "3.823892", "GCcontent (%)": "67.1", "Number of CDSs": "3167", "Average Protein Length": "292.8", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas diminuta", "strain": "strain=ATCC 11568", "accession": "GCA_000204035.1", "taxid": 293, "species_taxid": 293, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 1117, "total_fragments": 1118, "ani_threshold": 95, 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