{ "type": "genome", "identifier": "GCF_000205165.1", "organism": "Paraprevotella xylaniphila YIT 11841", "title": "Paraprevotella xylaniphila YIT 11841", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000205165.1", "bioproject": "PRJNA224116", "biosample": "SAMN00189151", "wgs_master": "AFBR00000000.1", "refseq_category": "na", "taxid": "762982", "species_taxid": "454155", "organism_name": "Paraprevotella xylaniphila YIT 11841", "infraspecific_name": "strain=YIT 11841", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/04/20", "asm_name": "ASM20516v1", "asm_submitter": "Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine", "gbrs_paired_asm": "GCA_000205165.1", 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"762982" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "1.082 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3789812", "Number of Sequences": "87", "Longest Sequences (bp)": "284784", "N50 (bp)": "131765", "Gap Ratio (%)": "0.010053", "GCcontent (%)": "48.5", "Number of CDSs": "2877", "Average Protein Length": "388.3", "Coding Ratio (%)": "88.4", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraprevotella xylaniphila", "strain": "strain=YIT 11841", "accession": 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{ "organism_name": "Phocaeicola sartorii", "strain": "strain=JCM 17136", "accession": "GCA_000614185.1", "taxid": 671267, "species_taxid": 671267, "relation_to_type": "type", "validated": true, "ani": 77.1803, "matched_fragments": 74, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola sartorii", "strain": "strain=DSM 21941", "accession": "GCA_024622025.1", "taxid": 671267, "species_taxid": 671267, "relation_to_type": "type", "validated": true, "ani": 77.1691, "matched_fragments": 72, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola intestinalis", "strain": "strain=Sa1CVN1", "accession": "GCA_014837065.1", "taxid": 2762212, "species_taxid": 2762212, "relation_to_type": "type", "validated": true, "ani": 77.0055, "matched_fragments": 89, "total_fragments": 1223, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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