{
    "type": "genome",
    "identifier": "GCF_000212375.1",
    "organism": "Porphyromonas asaccharolytica DSM 20707",
    "title": "Porphyromonas asaccharolytica DSM 20707",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000212375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00713611",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "879243",
        "species_taxid": "28123",
        "organism_name": "Porphyromonas asaccharolytica DSM 20707",
        "infraspecific_name": "strain=DSM 20707",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/05/05",
        "asm_name": "ASM21237v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000212375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/212/375/GCF_000212375.1_ASM21237v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2186370",
        "genome_size_ungapped": "2186370",
        "gc_percent": "52.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000212375.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "1713",
        "protein_coding_gene_count": "1642",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-05-05",
    "dateModified": "2011-05-05",
    "datePublished": "2011-05-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porphyromonas asaccharolytica DSM 20707"
        ],
        "sample_taxid": [
            "879243"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2186370",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2186370",
        "N50 (bp)": "2186370",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.5",
        "Number of CDSs": "1664",
        "Average Protein Length": "376.4",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Porphyromonas asaccharolytica",
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                "species_taxid": 28123,
                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Porphyromonas uenonis",
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                "taxid": 281920,
                "species_taxid": 281920,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "species_taxid": 281920,
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                "ani": 88.6616,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Porphyromonas bobii",
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                "accession": "GCA_943169685.1",
                "taxid": 2811780,
                "species_taxid": 2811780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9884,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000212375.1",
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                "total_fragments": 728,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.18",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_900539765.1",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.88",
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                "num_clustered_genomes": 4,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
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                "mean_intra_species_ani": "96.69",
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            },
            {
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                "mean_intra_species_ani": "97.10",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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    "_bac2feature": {
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        "coding_genes": 1678.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
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        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Porphyromonas",
        "asaccharolytica",
        "DSM",
        "20707"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}