{
    "type": "genome",
    "identifier": "GCF_000212735.1",
    "organism": "Haliscomenobacter hydrossis DSM 1100",
    "title": "Haliscomenobacter hydrossis DSM 1100",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000212735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00713614",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "760192",
        "species_taxid": "2350",
        "organism_name": "Haliscomenobacter hydrossis DSM 1100",
        "infraspecific_name": "strain=DSM 1100",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/05/09",
        "asm_name": "ASM21273v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000212735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/212/735/GCF_000212735.1_ASM21273v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8771651",
        "genome_size_ungapped": "8771651",
        "gc_percent": "47.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000212735.1-RS_2024_03_12",
        "annotation_date": "2024-03-12",
        "total_gene_count": "6825",
        "protein_coding_gene_count": "6757",
        "non_coding_gene_count": "59",
        "pubmed_id": "21886862"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-05-09",
    "dateModified": "2011-05-09",
    "datePublished": "2011-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haliscomenobacter hydrossis DSM 1100"
        ],
        "sample_taxid": [
            "760192"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands"
        ],
        "sample_host_location_id": [],
        "data_size": "2.479 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8771651",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "8371686",
        "N50 (bp)": "8371686",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "6733",
        "Average Protein Length": "382.4",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Haliscomenobacter hydrossis",
                "strain": "strain=DSM 1100",
                "accession": "GCA_000212735.1",
                "taxid": 2350,
                "species_taxid": 2350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2921,
                "total_fragments": 2921,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Neolewinella lacunae",
                "strain": "strain=KCTC 42187",
                "accession": "GCA_014349155.1",
                "taxid": 1517758,
                "species_taxid": 1517758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4846,
                "matched_fragments": 53,
                "total_fragments": 2921,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavilitoribacter nigricans",
                "strain": "strain=NBRC 102662",
                "accession": "GCA_002646595.1",
                "taxid": 70997,
                "species_taxid": 70997,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4615,
                "matched_fragments": 61,
                "total_fragments": 2921,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000212735.1",
                "gtdb_species": "s__Haliscomenobacter hydrossis",
                "ani": 100.0,
                "matched_fragments": 2921,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Haliscomenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016718685.1",
                "gtdb_species": "s__Haliscomenobacter sp016718685",
                "ani": 91.3487,
                "matched_fragments": 1887,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Haliscomenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016707205.1",
                "gtdb_species": "s__JADJPL01 sp016707205",
                "ani": 76.8174,
                "matched_fragments": 80,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJPL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_013299105.1",
                "gtdb_species": "s__Haliscomenobacter sp013299105",
                "ani": 76.6406,
                "matched_fragments": 347,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Haliscomenobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002646595.1",
                "gtdb_species": "s__Flavilitoribacter nigricans",
                "ani": 75.4615,
                "matched_fragments": 61,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Flavilitoribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003045895.1",
                "gtdb_species": "s__Lewinella sp003045895",
                "ani": 75.4233,
                "matched_fragments": 68,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__Lewinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002344975.1",
                "gtdb_species": "s__UBA2329 sp002344975",
                "ani": 75.3887,
                "matched_fragments": 76,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__UBA2329",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002698985.1",
                "gtdb_species": "s__UBA6168 sp002698985",
                "ani": 75.1537,
                "matched_fragments": 53,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__UBA6168",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011321935.1",
                "gtdb_species": "s__UBA6168 sp011321935",
                "ani": 74.8473,
                "matched_fragments": 54,
                "total_fragments": 2921,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__UBA6168",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": 0.477,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 7.5,
        "genome_size": 8771650.8,
        "gc_content": 46.762,
        "coding_genes": 6750.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Haliscomenobacter",
        "hydrossis",
        "DSM",
        "1100"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}