{
    "type": "genome",
    "identifier": "GCF_000213555.1",
    "organism": "Dysgonomonas gadei ATCC BAA-286",
    "title": "Dysgonomonas gadei ATCC BAA-286",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000213555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02463862",
        "wgs_master": "ADLV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "742766",
        "species_taxid": "156974",
        "organism_name": "Dysgonomonas gadei ATCC BAA-286",
        "infraspecific_name": "strain=ATCC BAA-286",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/05/18",
        "asm_name": "Dysg_gade_ATCC_V1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000213555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/213/555/GCF_000213555.1_Dysg_gade_ATCC_V1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5176087",
        "genome_size_ungapped": "5165995",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000213555.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "4136",
        "protein_coding_gene_count": "4028",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-05-18",
    "dateModified": "2011-05-18",
    "datePublished": "2011-05-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dysgonomonas gadei ATCC BAA-286"
        ],
        "sample_taxid": [
            "742766"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "1.468 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5176087",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "1016930",
        "N50 (bp)": "413047",
        "Gap Ratio (%)": "0.194974",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "4027",
        "Average Protein Length": "371.2",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "7",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            },
            {
                "organism_name": "Dysgonomonas hofstadii",
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                "accession": "GCA_014196915.1",
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                "species_taxid": 637886,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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                "accession": "GCA_000213575.1",
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            },
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Dysgonomonas macrotermitis",
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                "species_taxid": 1346286,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dysgonomonas massiliensis",
                "strain": "strain=Marseille-P4356",
                "accession": "GCA_900240225.1",
                "taxid": 2040292,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "status": "below_threshold"
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            {
                "organism_name": "Bacteroides ovatus",
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                "species_taxid": 28116,
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            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=FDAARGOS_1516",
                "accession": "GCA_020149745.1",
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    },
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}