{ "type": "genome", "identifier": "GCF_000213655.1", "organism": "Alteromonas naphthalenivorans", "title": "Alteromonas naphthalenivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000213655.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603134", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "715451", "species_taxid": "715451", "organism_name": "Alteromonas naphthalenivorans", "infraspecific_name": "strain=SN2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/05/13", "asm_name": "ASM21365v1", "asm_submitter": "Chung-ang University", "gbrs_paired_asm": "GCA_000213655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/213/655/GCF_000213655.1_ASM21365v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4972148", "genome_size_ungapped": "4972148", "gc_percent": "43.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "4372", "protein_coding_gene_count": "4225", "non_coding_gene_count": "83", "pubmed_id": "21705606" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-05-13", "dateModified": "2011-05-13", "datePublished": "2011-05-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas naphthalenivorans" ], "sample_taxid": [ "715451" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.414 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4972148", "Number of Sequences": "1", "Longest Sequences (bp)": "4972148", "N50 (bp)": "4972148", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.5", "Number of CDSs": "4341", "Average Protein Length": "330.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "15", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas naphthalenivorans", "strain": "strain=SN2", "accession": "GCA_000213655.1", "taxid": 715451, "species_taxid": 715451, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1657, "total_fragments": 1657, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas lipotrueae", "strain": "strain=MD_652", "accession": "GCA_019249215.1", "taxid": 2803814, "species_taxid": 2803814, "relation_to_type": "type", "validated": true, "ani": 93.0118, "matched_fragments": 1285, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas mediterranea", "strain": "strain=DE", "accession": "GCA_000020585.3", "taxid": 314275, "species_taxid": 314275, "relation_to_type": "type", "validated": true, "ani": 80.1934, "matched_fragments": 427, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas profundi", "strain": "strain=345S023", "accession": "GCA_010500865.1", "taxid": 2696062, "species_taxid": 2696062, "relation_to_type": "type", "validated": true, "ani": 79.7017, "matched_fragments": 460, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 79.671, "matched_fragments": 384, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas australica", "strain": "strain=H 17", "accession": "GCA_000730385.1", "taxid": 589873, "species_taxid": 589873, "relation_to_type": "type", "validated": true, "ani": 79.5445, "matched_fragments": 465, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 79.5044, "matched_fragments": 427, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas abrolhosensis", "strain": 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"0.74", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_006538325.1", "gtdb_species": "s__Alteromonas sp006538325", "ani": 79.1967, "matched_fragments": 351, "total_fragments": 1657, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.182, "cell_length": 0.24, "doubling_h": null, "growth_tmp": 25.7, "optimum_tmp": 28.0, "optimum_ph": 7.5, "genome_size": 4972148.667, "gc_content": 43.5, "coding_genes": 4286.5, "rRNA16S_genes": 5.0, "tRNA_genes": 64.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, 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