{ "type": "genome", "identifier": "GCF_000214155.1", "organism": "Mycolicibacter sinensis", "title": "Mycolicibacter sinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000214155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603865", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "875328", "species_taxid": "875328", "organism_name": "Mycolicibacter sinensis", "infraspecific_name": "strain=JDM601", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/05/20", "asm_name": "ASM21415v1", "asm_submitter": "Shanghai Jiao Tong University School of Medicine", "gbrs_paired_asm": "GCA_000214155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/214/155/GCF_000214155.1_ASM21415v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4643668", "genome_size_ungapped": "4643668", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000214155.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4424", "protein_coding_gene_count": "4293", "non_coding_gene_count": "56", "pubmed_id": "21685274" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-05-20", "dateModified": "2011-05-20", "datePublished": "2011-05-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacter sinensis" ], "sample_taxid": [ "875328" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.260 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4643668", "Number of Sequences": "1", "Longest Sequences (bp)": "4643668", "N50 (bp)": "4643668", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "4397", "Average Protein Length": "327.2", "Coding Ratio (%)": "93.0", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": 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"matched_fragments": 1216, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter terrae", "strain": "strain=JCM 12143", "accession": "GCA_010727125.1", "taxid": 1788, "species_taxid": 1788, "relation_to_type": "type", "validated": true, "ani": 87.5915, "matched_fragments": 1243, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter kumamotonensis", "strain": "strain=DSM 45093", "accession": "GCA_002086285.1", "taxid": 354243, "species_taxid": 354243, "relation_to_type": "type", "validated": true, "ani": 87.3432, "matched_fragments": 1215, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter longobardus", "strain": "strain=DSM 45394", "accession": "GCA_002102265.1", "taxid": 1108812, "species_taxid": 1108812, "relation_to_type": "type", "validated": true, "ani": 85.9438, "matched_fragments": 1166, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter nonchromogenicus", "strain": "strain=DSM 44164", "accession": "GCA_002101775.1", "taxid": 1782, "species_taxid": 1782, "relation_to_type": "type", "validated": true, "ani": 84.186, "matched_fragments": 1106, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 80.0198, "matched_fragments": 765, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 79.2675, "matched_fragments": 670, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium angelicum", "strain": "strain=DSM 45057", "accession": "GCA_002086155.1", "taxid": 470074, "species_taxid": 470074, "relation_to_type": "type", "validated": true, "ani": 79.188, "matched_fragments": 708, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.1639, "matched_fragments": 699, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.1373, "matched_fragments": 713, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ostraviense", "strain": "strain=241/15", "accession": "GCA_002705925.1", "taxid": 2738409, "species_taxid": 2738409, "relation_to_type": "type", "validated": true, "ani": 79.1186, "matched_fragments": 686, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.0751, "matched_fragments": 690, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 78.9785, "matched_fragments": 683, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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