{
    "type": "genome",
    "identifier": "GCF_000214495.1",
    "organism": "Megasphaera lornae",
    "title": "Megasphaera lornae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000214495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00255229",
        "wgs_master": "AFIJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1000568",
        "species_taxid": "1000568",
        "organism_name": "Megasphaera lornae",
        "infraspecific_name": "strain=UPII 199-6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/05/23",
        "asm_name": "ASM21449v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000214495.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/214/495/GCF_000214495.1_ASM21449v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1640787",
        "genome_size_ungapped": "1640787",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000214495.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1556",
        "protein_coding_gene_count": "1463",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-05-23",
    "dateModified": "2011-05-23",
    "datePublished": "2011-05-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Megasphaera lornae"
        ],
        "sample_taxid": [
            "1000568"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.463 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1640787",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "149073",
        "N50 (bp)": "100595",
        "Gap Ratio (%)": "0.000061",
        "GCcontent (%)": "46.4",
        "Number of CDSs": "1477",
        "Average Protein Length": "320.1",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Megasphaera lornae",
                "strain": "strain=UPII 199-6",
                "accession": "GCA_000214495.2",
                "taxid": 1000568,
                "species_taxid": 1000568,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 524,
                "total_fragments": 525,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Megasphaera hutchinsoni",
                "strain": "strain=KA00182",
                "accession": "GCA_001553405.1",
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                "species_taxid": 1588748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4956,
                "matched_fragments": 154,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera stantonii",
                "strain": "strain=AJH120",
                "accession": "GCA_003030445.1",
                "taxid": 2144175,
                "species_taxid": 2144175,
                "relation_to_type": "type",
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                "ani": 77.5788,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera cerevisiae",
                "strain": "strain=DSM 20462",
                "accession": "GCA_001045675.1",
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                "species_taxid": 39029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3863,
                "matched_fragments": 82,
                "total_fragments": 525,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera cerevisiae",
                "strain": "strain=DSM 20462",
                "accession": "GCA_900167325.1",
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                "species_taxid": 39029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2769,
                "matched_fragments": 81,
                "total_fragments": 525,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "'Megasphaera vaginalis' Bordigoni et al. 2020",
                "strain": "strain=Marseille-P4857",
                "accession": "GCA_900240295.1",
                "taxid": 2045301,
                "species_taxid": 2045301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.234,
                "matched_fragments": 63,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megasphaera paucivorans",
                "strain": "strain=DSM 16981",
                "accession": "GCA_900103535.1",
                "taxid": 349095,
                "species_taxid": 349095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7376,
                "matched_fragments": 60,
                "total_fragments": 525,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000214495.1",
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                "ani": 100.0,
                "matched_fragments": 524,
                "total_fragments": 525,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001553405.1",
                "gtdb_species": "s__Megasphaera hutchinsoni",
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                "total_fragments": 525,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002431345.1",
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                "total_fragments": 525,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Megasphaeraceae;g__Megasphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001045675.1",
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                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.50",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_900240295.1",
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            {
                "accession": "GCF_000165735.1",
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                "accession": "GCF_000239275.1",
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "lornae"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}