{
    "type": "genome",
    "identifier": "GCF_000214825.1",
    "organism": "Thiomicrospira cyclica ALM1",
    "title": "Thiomicrospira cyclica ALM1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000214825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232061",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "717773",
        "species_taxid": "147268",
        "organism_name": "Thiomicrospira cyclica ALM1",
        "infraspecific_name": "strain=ALM1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/05/25",
        "asm_name": "ASM21482v1",
        "asm_submitter": "US DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000214825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/214/825/GCF_000214825.1_ASM21482v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1932455",
        "genome_size_ungapped": "1932455",
        "gc_percent": "47.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000214825.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1725",
        "protein_coding_gene_count": "1672",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-05-25",
    "dateModified": "2011-05-25",
    "datePublished": "2011-05-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiomicrospira cyclica ALM1"
        ],
        "sample_taxid": [
            "717773"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.547 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1932455",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1932455",
        "N50 (bp)": "1932455",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.0",
        "Number of CDSs": "1678",
        "Average Protein Length": "356.8",
        "Coding Ratio (%)": "92.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiomicrospira cyclica",
                "strain": "strain=ALM1",
                "accession": "GCA_000214825.1",
                "taxid": 147268,
                "species_taxid": 147268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 643,
                "total_fragments": 644,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thiomicrospira aerophila",
                "strain": "strain=AL3",
                "accession": "GCA_000227665.3",
                "taxid": 92245,
                "species_taxid": 92245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6576,
                "matched_fragments": 372,
                "total_fragments": 644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrospira microaerophila",
                "strain": "strain=ASL8-2",
                "accession": "GCA_000934765.1",
                "taxid": 406020,
                "species_taxid": 406020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8513,
                "matched_fragments": 164,
                "total_fragments": 644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrospira pelophila",
                "strain": "strain=DSM 1534",
                "accession": "GCA_000711195.1",
                "taxid": 934,
                "species_taxid": 934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6389,
                "matched_fragments": 120,
                "total_fragments": 644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiosulfativibrio zosterae",
                "strain": "strain=AkT22",
                "accession": "GCA_011398155.1",
                "taxid": 2675053,
                "species_taxid": 2675053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6699,
                "matched_fragments": 69,
                "total_fragments": 644,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000214825.1",
                "gtdb_species": "s__Thiomicrospira cyclica",
                "ani": 100.0,
                "matched_fragments": 643,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000227665.2",
                "gtdb_species": "s__Thiomicrospira aerophila",
                "ani": 80.652,
                "matched_fragments": 372,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112445.1",
                "gtdb_species": "s__Thiomicrospira sp900112445",
                "ani": 79.691,
                "matched_fragments": 339,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000711195.1",
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                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859555.1",
                "gtdb_species": "s__Thiomicrospira sp014859555",
                "ani": 77.6366,
                "matched_fragments": 116,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002421475.1",
                "gtdb_species": "s__Thiomicrospira sp002421475",
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                "matched_fragments": 100,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_011398155.1",
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                "matched_fragments": 70,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiosulfativibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016938655.1",
                "gtdb_species": "s__Thiomicrorhabdus sp016938655",
                "ani": 76.0624,
                "matched_fragments": 52,
                "total_fragments": 644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.302,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": 10.0,
        "genome_size": 1932456.25,
        "gc_content": 47.0,
        "coding_genes": 1658.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 41.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thiomicrospira",
        "cyclica",
        "ALM1"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}