{ "type": "genome", "identifier": "GCF_000215975.1", "organism": "Thermodesulfobacterium geofontis OPF15", "title": "Thermodesulfobacterium geofontis OPF15", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000215975.1", "bioproject": "PRJNA224116", "biosample": "SAMN02232058", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "795359", "species_taxid": "1295609", "organism_name": "Thermodesulfobacterium geofontis OPF15", "infraspecific_name": "strain=OPF15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/06/07", "asm_name": "ASM21597v1", "asm_submitter": "US DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000215975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/215/975/GCF_000215975.1_ASM21597v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1634377", "genome_size_ungapped": "1634377", "gc_percent": "30.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000215975.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "1701", "protein_coding_gene_count": "1635", "non_coding_gene_count": "52", "pubmed_id": "23580711" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-06-07", "dateModified": "2011-06-07", "datePublished": "2011-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermodesulfobacterium geofontis OPF15" ], "sample_taxid": [ "795359" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.442 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1634377", "Number of Sequences": "1", "Longest Sequences (bp)": "1634377", "N50 (bp)": "1634377", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.6", "Number of CDSs": "1642", "Average Protein Length": "312.5", "Coding Ratio (%)": "94.2", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermodesulfobacterium geofontis", "strain": "strain=OPF15", "accession": "GCA_000215975.1", "taxid": 1295609, "species_taxid": 1295609, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 544, "total_fragments": 544, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermodesulfobacterium hydrogeniphilum", "strain": "strain=DSM 14290", "accession": "GCA_000746255.1", "taxid": 161156, "species_taxid": 161156, "relation_to_type": "type", "validated": true, "ani": 77.8988, "matched_fragments": 243, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermodesulfobacterium thermophilum", "strain": "strain=DSM 1276", "accession": "GCA_000421605.1", "taxid": 886, "species_taxid": 886, "relation_to_type": "type", "validated": true, "ani": 77.2561, "matched_fragments": 79, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermodesulfobacterium commune", "strain": "strain=DSM 2178", "accession": "GCA_000746435.1", "taxid": 1741, "species_taxid": 1741, "relation_to_type": "type", "validated": true, "ani": 77.0199, "matched_fragments": 92, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermodesulfobacterium commune", "strain": "strain=DSM 2178", "accession": "GCA_000734015.1", "taxid": 1741, "species_taxid": 1741, "relation_to_type": "type", "validated": true, "ani": 77.0063, "matched_fragments": 93, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000215975.1", "gtdb_species": "s__Thermodesulfobacterium geofontis", "ani": 100.0, "matched_fragments": 544, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfobacteriaceae;g__Thermodesulfobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.85", 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1.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thermodesulfobacterium", "geofontis", "OPF15" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }