{
    "type": "genome",
    "identifier": "GCF_000217795.1",
    "organism": "Thermodesulfatator indicus DSM 15286",
    "title": "Thermodesulfatator indicus DSM 15286",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US DOE Joint Genome Institute (JGI-PGF)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000217795.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232057",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "667014",
        "species_taxid": "171695",
        "organism_name": "Thermodesulfatator indicus DSM 15286",
        "infraspecific_name": "strain=DSM 15286",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/06/10",
        "asm_name": "ASM21779v1",
        "asm_submitter": "US DOE Joint Genome Institute (JGI-PGF)",
        "gbrs_paired_asm": "GCA_000217795.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/217/795/GCF_000217795.1_ASM21779v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2322224",
        "genome_size_ungapped": "2322224",
        "gc_percent": "42.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000217795.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "2288",
        "protein_coding_gene_count": "2219",
        "non_coding_gene_count": "60",
        "pubmed_id": "22768359"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-06-10",
    "dateModified": "2011-06-10",
    "datePublished": "2011-06-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermodesulfatator indicus DSM 15286"
        ],
        "sample_taxid": [
            "667014"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Indian Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.655 MB",
        "sample_ph_range": {
            "min": 625.0,
            "max": 625.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2322224",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2322224",
        "N50 (bp)": "2322224",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.4",
        "Number of CDSs": "2232",
        "Average Protein Length": "314.1",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermodesulfatator indicus",
                "strain": "strain=DSM 15286",
                "accession": "GCA_000217795.1",
                "taxid": 171695,
                "species_taxid": 171695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 774,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermodesulfatator autotrophicus",
                "strain": "strain=S606",
                "accession": "GCA_001642325.1",
                "taxid": 1795632,
                "species_taxid": 1795632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6949,
                "matched_fragments": 416,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermodesulfatator atlanticus",
                "strain": "strain=DSM 21156",
                "accession": "GCA_000421585.1",
                "taxid": 501497,
                "species_taxid": 501497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4398,
                "matched_fragments": 166,
                "total_fragments": 774,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000217795.1",
                "gtdb_species": "s__Thermodesulfatator indicus",
                "ani": 100.0,
                "matched_fragments": 774,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae;g__Thermodesulfatator",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001642325.1",
                "gtdb_species": "s__Thermodesulfatator autotrophicus",
                "ani": 79.663,
                "matched_fragments": 419,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae;g__Thermodesulfatator",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000421585.1",
                "gtdb_species": "s__Thermodesulfatator atlanticus",
                "ani": 77.4215,
                "matched_fragments": 167,
                "total_fragments": 774,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Thermodesulfobacteria;o__Thermodesulfobacteriales;f__Thermodesulfatatoraceae;g__Thermodesulfatator",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.097,
        "doubling_h": 0.301,
        "growth_tmp": 70.0,
        "optimum_tmp": 70.0,
        "optimum_ph": 6.25,
        "genome_size": 2322223.2,
        "gc_content": 42.415,
        "coding_genes": 2206.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermodesulfatator",
        "indicus",
        "DSM",
        "15286"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}