{
    "type": "genome",
    "identifier": "GCF_000220155.1",
    "organism": "Thermophagus xiamenensis",
    "title": "Thermophagus xiamenensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000220155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02471207",
        "wgs_master": "AFSL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "385682",
        "species_taxid": "385682",
        "organism_name": "Thermophagus xiamenensis",
        "infraspecific_name": "strain=HS1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/07/06",
        "asm_name": "ASM22015v2",
        "asm_submitter": "Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration",
        "gbrs_paired_asm": "GCA_000220155.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/220/155/GCF_000220155.1_ASM22015v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3863529",
        "genome_size_ungapped": "3863529",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "114",
        "contig_count": "114",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000220155.1-RS_2024_09_05",
        "annotation_date": "2024-09-05",
        "total_gene_count": "2963",
        "protein_coding_gene_count": "2897",
        "non_coding_gene_count": "49",
        "pubmed_id": "21914884"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-07-06",
    "dateModified": "2011-07-06",
    "datePublished": "2011-07-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermophagus xiamenensis"
        ],
        "sample_taxid": [
            "385682"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xiamen, Fujian province"
        ],
        "sample_host_location_id": [],
        "data_size": "1.094 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3863529",
        "Number of Sequences": "114",
        "Longest Sequences (bp)": "167627",
        "N50 (bp)": "77215",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "2845",
        "Average Protein Length": "366.5",
        "Coding Ratio (%)": "81.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "12"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermophagus xiamenensis",
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                "accession": "GCA_000220155.2",
                "taxid": 385682,
                "species_taxid": 385682,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1231,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermophagus xiamenensis",
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                "accession": "GCA_900112795.1",
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                "species_taxid": 385682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9748,
                "matched_fragments": 1226,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerophaga thermohalophila",
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                "species_taxid": 177400,
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                "matched_fragments": 205,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinilabilia salmonicolor",
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                "accession": "GCA_000614895.1",
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                "species_taxid": 989,
                "relation_to_type": "type",
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                "matched_fragments": 123,
                "total_fragments": 1232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinilabilia rubra",
                "strain": "strain=WTE16",
                "accession": "GCA_003121985.1",
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                "species_taxid": 2162893,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8167,
                "matched_fragments": 125,
                "total_fragments": 1232,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinilabilia salmonicolor",
                "strain": "strain=JCM 21150",
                "accession": "GCA_000259075.1",
                "taxid": 989,
                "species_taxid": 989,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7714,
                "matched_fragments": 123,
                "total_fragments": 1232,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900112795.1",
                "gtdb_species": "s__Thermophagus xiamenensis",
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                "matched_fragments": 1226,
                "total_fragments": 1232,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Thermophagus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
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            },
            {
                "accession": "GCF_000250735.1",
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                "matched_fragments": 218,
                "total_fragments": 1232,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Anaerophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000191885.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Anaerophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
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                "accession": "GCF_003121985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Marinilabilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.603,
        "cell_length": 0.845,
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        "gc_content": null,
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        "rRNA16S_genes": null,
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        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
        "Thermophagus",
        "xiamenensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}