{ "type": "genome", "identifier": "GCF_000220255.1", "organism": "Prevotella pallens ATCC 700821", "title": "Prevotella pallens ATCC 700821", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000220255.1", "bioproject": "PRJNA224116", "biosample": "SAMN00262640", "wgs_master": "AFPY00000000.1", "refseq_category": "na", "taxid": "997353", "species_taxid": "60133", "organism_name": "Prevotella pallens ATCC 700821", "infraspecific_name": "strain=ATCC 700821", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/07/08", "asm_name": "ASM22025v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000220255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/220/255/GCF_000220255.1_ASM22025v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3127600", "genome_size_ungapped": "3047417", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "168", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000220255.1-RS_2024_08_21", "annotation_date": "2024-08-21", "total_gene_count": "2556", "protein_coding_gene_count": "2404", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-07-08", "dateModified": "2011-07-08", "datePublished": "2011-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella pallens ATCC 700821" ], "sample_taxid": [ "997353" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.861 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3127600", "Number of Sequences": "40", "Longest Sequences (bp)": "2314907", "N50 (bp)": "2314907", "Gap Ratio (%)": "2.563755", "GCcontent (%)": "37.5", "Number of CDSs": "2408", "Average Protein Length": "340.0", "Coding Ratio (%)": "78.5", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella pallens", "strain": "strain=ATCC 700821", "accession": "GCA_000220255.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 99.989, "matched_fragments": 1025, "total_fragments": 1029, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 99.9121, "matched_fragments": 979, "total_fragments": 1029, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.1424, "matched_fragments": 649, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.1247, "matched_fragments": 653, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 84.0437, "matched_fragments": 657, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 83.178, "matched_fragments": 559, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 82.2005, "matched_fragments": 122, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.8857, "matched_fragments": 482, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.8546, "matched_fragments": 489, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella veroralis", "strain": "strain=DSM 19559", "accession": "GCA_000377625.1", "taxid": 28137, "species_taxid": 28137, "relation_to_type": "type", "validated": true, "ani": 80.4306, "matched_fragments": 137, "total_fragments": 1029, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.079, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 34.75, "optimum_ph": 7.109, "genome_size": 3050545.5, "gc_content": 37.46, "coding_genes": 2508.172, "rRNA16S_genes": 4.0, "tRNA_genes": 50.875, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Prevotella", "pallens", "ATCC", "700821" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }