{ "type": "genome", "identifier": "GCF_000222105.3", "organism": "Mycobacterium colombiense CECT 3035", "title": "Mycobacterium colombiense CECT 3035", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Nacional de Colombia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000222105.3", "bioproject": "PRJNA224116", "biosample": "SAMN00622208", "wgs_master": "AFVW00000000.2", "refseq_category": "reference genome", "taxid": "1041522", "species_taxid": "339268", "organism_name": "Mycobacterium colombiense CECT 3035", "infraspecific_name": "strain=CECT 3035", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/09/11", "asm_name": "ASM22210v4", "asm_submitter": "Universidad Nacional de Colombia", "gbrs_paired_asm": "GCA_000222105.4", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/105/GCF_000222105.3_ASM22210v4", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5579559", "genome_size_ungapped": "5579559", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000222105.3-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5304", "protein_coding_gene_count": "5190", "non_coding_gene_count": "54", "pubmed_id": "21952541" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-09-11", "dateModified": "2012-09-11", "datePublished": "2012-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium colombiense CECT 3035" ], "sample_taxid": [ "1041522" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5579559", "Number of Sequences": "17", "Longest Sequences (bp)": "1380431", "N50 (bp)": "745349", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "5294", "Average Protein Length": "322.3", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_000222105.4", "taxid": 339268, "species_taxid": 339268, "relation_to_type": 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