{ "type": "genome", "identifier": "GCF_000222605.1", "organism": "Vibrio ichthyoenteri ATCC 700023", "title": "Vibrio ichthyoenteri ATCC 700023", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000222605.1", "bioproject": "PRJNA224116", "biosample": "SAMN02951902", "wgs_master": "AFWF00000000.1", "refseq_category": "reference genome", "taxid": "870968", "species_taxid": "142461", "organism_name": "Vibrio ichthyoenteri ATCC 700023", "infraspecific_name": "strain=ATCC 700023", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/08/04", "asm_name": "ASM22260v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_000222605.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/605/GCF_000222605.1_ASM22260v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4641086", "genome_size_ungapped": "4641086", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "326", "contig_count": "326", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000222605.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4460", "protein_coding_gene_count": "4231", "non_coding_gene_count": "70", "pubmed_id": "21930677" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-08-04", "dateModified": "2011-08-04", "datePublished": "2011-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio ichthyoenteri ATCC 700023" ], "sample_taxid": [ "870968" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.333 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4641086", "Number of Sequences": "326", "Longest Sequences (bp)": "108694", "N50 (bp)": "45976", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.4", "Number of CDSs": "4148", "Average Protein Length": "304.8", "Coding Ratio (%)": "81.7", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1409, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 87.151, "matched_fragments": 1037, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 84.9769, "matched_fragments": 876, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marinisediminis", "strain": "strain=404", "accession": "GCA_014050145.1", "taxid": 2758441, "species_taxid": 2758441, "relation_to_type": "type", "validated": true, "ani": 81.0741, "matched_fragments": 624, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 80.922, "matched_fragments": 632, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": "type", "validated": true, "ani": 80.8801, "matched_fragments": 669, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sinensis", "strain": "strain=BEI233", "accession": "GCA_003605645.1", "taxid": 2302434, "species_taxid": 2302434, "relation_to_type": "type", "validated": true, "ani": 80.8662, "matched_fragments": 516, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.6612, "matched_fragments": 595, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.6089, "matched_fragments": 600, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.2498, "matched_fragments": 425, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 80.2012, "matched_fragments": 403, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000176235.1", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.1301, "matched_fragments": 445, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.0868, "matched_fragments": 436, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 80.0585, "matched_fragments": 352, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bivalvicida", "strain": "strain=605", "accession": "GCA_001399455.2", "taxid": 1276888, "species_taxid": 1276888, "relation_to_type": "type", "validated": true, "ani": 79.9432, "matched_fragments": 408, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.8593, "matched_fragments": 353, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 79.3884, "matched_fragments": 324, "total_fragments": 1409, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000222605.1", "gtdb_species": "s__Vibrio ichthyoenteri", "ani": 100.0, "matched_fragments": 1401, "total_fragments": 1409, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000222585.1", "gtdb_species": "s__Vibrio scophthalmi", "ani": 87.1532, "matched_fragments": 1037, "total_fragments": 1409, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", 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592, "total_fragments": 1409, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003970385.1", "gtdb_species": "s__Vibrio aquaticus", "ani": 80.2362, "matched_fragments": 426, "total_fragments": 1409, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000817815.1", "gtdb_species": "s__Vibrio owensii", "ani": 80.173, "matched_fragments": 405, "total_fragments": 1409, "gtdb_taxonomy": 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