{ "type": "genome", "identifier": "GCF_000222765.1", "organism": "Streptococcus cristatus ATCC 51100", "title": "Streptococcus cristatus ATCC 51100", "description": "na", "data type": "Genome sequencing and assembly", "organization": "J. Craig Venter Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000222765.1", "bioproject": "PRJNA224116", "biosample": "SAMN00621700", "wgs_master": "AFUE00000000.1", "refseq_category": "na", "taxid": "889201", "species_taxid": "45634", "organism_name": "Streptococcus cristatus ATCC 51100", "infraspecific_name": "strain=ATCC 51100", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/08/04", "asm_name": "ASM22276v2", "asm_submitter": "J. Craig Venter Institute", "gbrs_paired_asm": "GCA_000222765.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/765/GCF_000222765.1_ASM22276v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1994424", "genome_size_ungapped": "1994424", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000222765.1-RS_2024_07_29", "annotation_date": "2024-07-29", "total_gene_count": "2000", "protein_coding_gene_count": "1860", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-08-04", "dateModified": "2011-08-04", "datePublished": "2011-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus cristatus ATCC 51100" ], "sample_taxid": [ "889201" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.564 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1994424", "Number of Sequences": "10", "Longest Sequences (bp)": "425534", "N50 (bp)": "303303", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "1900", "Average Protein Length": "303.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "13", "Number of tRNAs": "59", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus 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"matched_fragments": 123, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.3813, "matched_fragments": 82, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.7806, "matched_fragments": 122, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000222765.1", "gtdb_species": "s__Streptococcus cristatus", "ani": 100.0, "matched_fragments": 661, "total_fragments": 661, 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