{ "type": "genome", "identifier": "GCF_000225345.1", "organism": "Roseburia hominis A2-183", "title": "Roseburia hominis A2-183", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Aberdeen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000225345.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604129", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "585394", "species_taxid": "301301", "organism_name": "Roseburia hominis A2-183", "infraspecific_name": "strain=A2-183", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/09/06", "asm_name": "ASM22534v1", "asm_submitter": "University of Aberdeen", "gbrs_paired_asm": "GCA_000225345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/225/345/GCF_000225345.1_ASM22534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3592125", "genome_size_ungapped": "3592125", "gc_percent": "48.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000225345.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3351", "protein_coding_gene_count": "3213", "non_coding_gene_count": "74", "pubmed_id": "26543119" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-09-06", "dateModified": "2011-09-06", "datePublished": "2011-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseburia hominis A2-183" ], "sample_taxid": [ "585394" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.012 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3592125", "Number of Sequences": "1", "Longest Sequences (bp)": "3592125", "N50 (bp)": "3592125", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.5", "Number of CDSs": "3311", "Average Protein Length": "320.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1197, "total_fragments": 1197, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Coprococcus phoceensis", "strain": "strain=Marseille-P3062", "accession": "GCA_900104635.1", "taxid": 1870993, "species_taxid": 1870993, "relation_to_type": "type", "validated": true, "ani": 84.8863, "matched_fragments": 74, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 83.2751, "matched_fragments": 314, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 82.4942, "matched_fragments": 97, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 82.0619, "matched_fragments": 94, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1 82", "accession": "GCA_025151715.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 81.577, "matched_fragments": 399, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 81.519, "matched_fragments": 394, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 81.2625, "matched_fragments": 385, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 80.532, "matched_fragments": 110, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 79.8285, "matched_fragments": 207, "total_fragments": 1197, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, 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